SRR2935592.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935592.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	503948
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCGTCTTC	4178	0.829053791264178	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGC	3203	0.6355814488796463	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCG	2894	0.5742655988316254	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1600	0.3174930746823085	No Hit
GCTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCGTCTTCTGC	1511	0.2998325224031051	TruSeq Adapter, Index 27 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCGTCTTCTGC	979	0.1942660750712375	TruSeq Adapter, Index 27 (95% over 22bp)
GAACTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCGTCTTCT	796	0.15795280465444847	No Hit
CTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCGTCTTCTGCT	793	0.15735750513941915	Illumina Single End Adapter 2 (95% over 22bp)
GAATGACTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCGTCT	634	0.12580663084286473	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCGTCTT	594	0.11786930397580703	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGCGTTA	25	3.887676E-5	45.000004	42
TAGCGCG	25	3.887676E-5	45.000004	1
CGCCCTA	25	3.887676E-5	45.000004	21
CTACGTT	20	7.0295116E-4	45.0	27
AATTGCG	35	1.2101191E-7	45.0	1
CGCAGTA	20	7.0295116E-4	45.0	37
CGTATGG	85	0.0	42.35294	2
GCACGCG	55	6.002665E-11	40.909092	1
GCTACGA	45	1.9246727E-8	40.0	10
TACGGCT	445	0.0	39.943817	7
TCGTTGA	85	0.0	39.705883	24
CGTTGAT	85	0.0	39.705883	25
ATTGCGG	105	0.0	38.57143	2
TAGCGAG	35	6.241309E-6	38.571426	1
TACGGGT	70	0.0	38.571426	4
CGAAAGG	65	9.094947E-12	38.07692	2
CGTTTTT	880	0.0	37.840908	1
GGCGATA	150	0.0	37.5	8
ACACGGT	30	1.1390123E-4	37.499996	36
GCGAAGT	30	1.1390123E-4	37.499996	9