SRR2935590.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935590.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	542266
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14176	2.614215163775712	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTTC	3495	0.6445176352564977	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTT	1513	0.27901435826697596	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCG	1443	0.26610556442779004	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGC	1367	0.25209030254524534	No Hit
GAACTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTTCT	1293	0.2384438633438202	RNA PCR Primer, Index 40 (95% over 22bp)
CGTTCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTTC	1198	0.22092478599063928	RNA PCR Primer, Index 40 (95% over 21bp)
CGTTTTCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCT	983	0.18127634777028248	No Hit
CGCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTTCTG	898	0.16560138382269957	Illumina PCR Primer Index 8 (95% over 22bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCC	866	0.15970022092478597	No Hit
GCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTTCTGC	720	0.13277616520305532	RNA PCR Primer, Index 40 (95% over 24bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	557	0.10271711669180808	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	30	2.1633732E-6	45.000004	1
CGGTCTA	35	1.2103374E-7	45.000004	31
CCGATCG	20	7.029988E-4	45.0	10
TACGGAT	20	7.029988E-4	45.0	13
AATTGCG	20	7.029988E-4	45.0	1
CGTTTTT	7010	0.0	43.716118	1
CCATACG	40	3.4537152E-7	39.375	2
TATACGG	40	3.4537152E-7	39.375	2
ATGGGAC	155	0.0	39.193546	5
ACCGGTA	35	6.242186E-6	38.57143	41
TTTACGG	35	6.242186E-6	38.57143	2
TTAGACG	35	6.242186E-6	38.57143	1
TACCGGT	35	6.242186E-6	38.57143	40
GTTTTTT	7985	0.0	38.49092	2
ACGGGTA	30	1.1391267E-4	37.500004	5
GCGATAT	30	1.1391267E-4	37.500004	9
CGTAAGG	60	1.546141E-10	37.500004	2
TCGACGG	30	1.1391267E-4	37.500004	2
CGGTAGT	145	0.0	37.24138	12
TACGAAT	85	0.0	37.058826	12