##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935590.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 542266 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.071247321425275 33.0 31.0 34.0 30.0 34.0 2 32.15154555144523 33.0 31.0 34.0 30.0 34.0 3 32.02696647033006 33.0 31.0 34.0 30.0 34.0 4 35.767342964522946 37.0 35.0 37.0 35.0 37.0 5 35.84673573486075 37.0 35.0 37.0 35.0 37.0 6 35.773756790947616 37.0 35.0 37.0 35.0 37.0 7 36.02323951713735 37.0 35.0 37.0 35.0 37.0 8 35.86310039722203 37.0 35.0 37.0 35.0 37.0 9 37.74087809303921 39.0 38.0 39.0 35.0 39.0 10 37.47798313005057 39.0 37.0 39.0 35.0 39.0 11 37.39384914414697 39.0 37.0 39.0 35.0 39.0 12 37.151829544909695 39.0 37.0 39.0 34.0 39.0 13 37.07557914381503 39.0 37.0 39.0 33.0 39.0 14 38.10348426786854 40.0 37.0 41.0 33.0 41.0 15 38.22043240771134 40.0 37.0 41.0 33.0 41.0 16 38.061019868477835 40.0 36.0 41.0 33.0 41.0 17 38.075245359288616 40.0 36.0 41.0 33.0 41.0 18 37.8384814832573 39.0 36.0 41.0 33.0 41.0 19 37.50907672618235 39.0 36.0 41.0 33.0 41.0 20 37.40303098479344 39.0 35.0 41.0 33.0 41.0 21 37.32183282743156 39.0 35.0 41.0 33.0 41.0 22 37.43792345454076 39.0 35.0 41.0 33.0 41.0 23 37.477059229234364 39.0 35.0 41.0 33.0 41.0 24 37.40319142265973 39.0 35.0 41.0 33.0 41.0 25 37.142629263129166 39.0 35.0 41.0 33.0 41.0 26 37.18353723080555 39.0 35.0 41.0 33.0 41.0 27 37.18202505781296 39.0 35.0 41.0 33.0 41.0 28 37.01591469869031 39.0 35.0 41.0 33.0 41.0 29 36.90823138459723 39.0 35.0 41.0 33.0 41.0 30 36.60651967853415 38.0 35.0 41.0 32.0 41.0 31 36.342968211173115 38.0 35.0 41.0 31.0 41.0 32 36.00224797424142 38.0 35.0 41.0 30.0 41.0 33 35.5778437150771 38.0 35.0 41.0 27.0 41.0 34 35.1669844688769 38.0 35.0 41.0 23.0 41.0 35 34.88066926563716 38.0 34.0 41.0 22.0 41.0 36 34.69835468201953 38.0 34.0 41.0 21.0 41.0 37 34.65946417440887 38.0 34.0 41.0 21.0 41.0 38 34.528720222178784 38.0 34.0 40.0 21.0 41.0 39 34.41158029454179 38.0 34.0 40.0 20.0 41.0 40 34.26514662545688 37.0 34.0 40.0 19.0 41.0 41 34.06646737947797 37.0 34.0 40.0 18.0 41.0 42 34.06016973219785 37.0 34.0 40.0 18.0 41.0 43 33.98701190928438 37.0 34.0 40.0 18.0 41.0 44 33.863841730811075 37.0 34.0 40.0 18.0 41.0 45 33.832884599071306 36.0 33.0 40.0 19.0 41.0 46 33.72604035657777 36.0 33.0 40.0 19.0 41.0 47 33.64126093098221 36.0 33.0 40.0 20.0 41.0 48 33.54781048415354 35.0 33.0 40.0 19.0 41.0 49 33.50948243113159 35.0 33.0 40.0 19.0 41.0 50 33.37834937097292 35.0 33.0 40.0 18.0 41.0 51 32.28316914576979 35.0 31.0 39.0 17.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 7.0 9 13.0 10 15.0 11 20.0 12 14.0 13 15.0 14 23.0 15 35.0 16 79.0 17 163.0 18 258.0 19 525.0 20 850.0 21 1334.0 22 1985.0 23 2760.0 24 4717.0 25 7842.0 26 11865.0 27 14100.0 28 13400.0 29 12144.0 30 11499.0 31 12724.0 32 15021.0 33 20762.0 34 40237.0 35 48947.0 36 40309.0 37 54706.0 38 90528.0 39 135288.0 40 79.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.493407294574986 17.46283189431017 20.772831046018005 24.270929765096835 2 40.44915226106745 22.36485414907075 21.404808710116438 15.781184879745364 3 28.1725204973205 22.15517845485426 34.70861164078146 14.963689407043775 4 24.91507857767221 21.913415187380362 35.89271685851593 17.278789376431494 5 23.34979511900064 25.436593848775324 33.324420118539614 17.889190913684427 6 22.89024205832562 29.88809919854831 32.995245875640364 14.226412867485699 7 69.9728546506696 4.899440495992741 20.61349964777434 4.5142052055633215 8 71.18038010865516 5.151161975856867 19.328337015413098 4.340120900074871 9 66.37683350975352 5.352907982429287 20.819302703839078 7.450955803978121 10 41.396657728863694 18.854953104196095 25.948150907488206 13.800238259452001 11 32.18383597717725 18.9067726908934 31.155189519534694 17.754201812394655 12 28.292203457343813 17.23526830005938 35.78981533048356 18.682712912113246 13 25.691265910088408 17.275654383641974 37.90980810155901 19.123271604710602 14 19.94316442483947 20.330243828674487 39.13005794204321 20.59653380444284 15 19.367616630952337 19.697528519213815 41.119671895342876 19.81518295449097 16 25.230053147348347 19.959945856830412 36.045225037158886 18.764775958662355 17 24.388215377692866 21.46418916177669 35.169639992180954 18.97795546834948 18 25.34088436302479 21.0522142269661 34.668225557198866 18.938675852810245 19 23.80768847761062 24.298407054840244 32.44108979725817 19.452814670290962 20 25.11276753475232 24.47525753043709 32.899167567208714 17.51280736760188 21 25.021483921175218 24.424728823123708 33.56802749941911 16.985759756281972 22 23.070780760733662 21.166549258113175 35.69281496534911 20.069855015804052 23 22.507957349345155 21.828954793403977 36.156978309538125 19.506109547712747 24 24.11915923181612 20.653885731356937 34.91754968963571 20.30940534719123 25 24.80941087953145 21.359627931679288 32.377467884765046 21.453493304024224 26 22.303998406686016 20.360487288526294 33.75188560595722 23.583628698830463 27 22.031991679360313 20.009736918781556 35.22570103971114 22.73257036214699 28 20.526273083689556 23.17257582072267 33.300999878288515 23.00015121729926 29 24.040600000737644 23.534759693582117 32.038888663497254 20.385751642182985 30 24.9064112446659 22.453556003880017 33.27020318441503 19.369829567039055 31 25.900572781623776 22.67724695997905 31.550198611013787 19.87198164738339 32 28.309169300675315 22.7600476518904 30.43155941917804 18.499223628256242 33 27.225937086227052 24.122478635946194 29.22145220242464 19.43013207540211 34 24.683089111247984 25.776463949427036 30.874884281883798 18.665562657441182 35 23.948947564479425 27.488354423843646 29.76288389830821 18.799814113368715 36 24.11823717511332 30.233317228076256 26.550069523075393 19.09837607373503 37 24.2091519660093 29.23104159213375 26.54250865811244 20.01729778374451 38 24.819737914602797 28.161824639568035 26.391106947512842 20.627330498316322 39 24.809964113553125 25.989827870454725 26.568510657131373 22.63169735886078 40 25.975259374550497 23.685239347478912 28.808370799570692 21.5311304783999 41 21.78838429848082 25.280213031980615 28.49745327938687 24.433949390151696 42 22.23816355810617 24.62315542556605 29.65186827129121 23.48681274503657 43 22.12714793108917 23.230112158977327 29.987312499769487 24.655427410164016 44 22.90849878104104 22.723349795119 29.94194730999177 24.426204113848186 45 22.89706527792633 22.554797829847345 29.501204206053856 25.046932686172468 46 22.958658665673305 23.87094156742263 29.687644071359813 23.482755695544252 47 21.311680983133737 24.015888881102633 31.92344716430682 22.74898297145681 48 21.31131216045262 23.61387215868227 31.9230783416257 23.151737339239414 49 22.489885037970296 22.529533476190654 32.3427985527398 22.637782933099253 50 20.9600085566862 22.456690996669533 32.87500968159538 23.708290765048886 51 20.240804328502985 21.7325076622912 32.80253602475538 25.224151984450437 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 302.0 1 685.5 2 1069.0 3 11915.5 4 22762.0 5 14665.0 6 6568.0 7 6361.5 8 6155.0 9 6091.0 10 6027.0 11 5857.0 12 5687.0 13 5427.0 14 5167.0 15 4764.5 16 4362.0 17 4110.0 18 3858.0 19 3626.5 20 3395.0 21 3130.5 22 2866.0 23 2837.0 24 2808.0 25 2924.0 26 3240.0 27 3440.0 28 3691.5 29 3943.0 30 4518.0 31 5093.0 32 5805.0 33 6517.0 34 7717.0 35 8917.0 36 9622.5 37 10328.0 38 11151.5 39 11975.0 40 13153.5 41 14332.0 42 15370.5 43 16409.0 44 18538.5 45 20668.0 46 29396.0 47 38124.0 48 37841.5 49 37559.0 50 38622.5 51 39686.0 52 37550.5 53 35415.0 54 34482.5 55 33550.0 56 33499.5 57 33449.0 58 33274.0 59 33099.0 60 32230.5 61 31362.0 62 28826.0 63 26290.0 64 23214.0 65 20138.0 66 16698.5 67 13259.0 68 11411.0 69 9563.0 70 7800.0 71 6037.0 72 5027.0 73 4017.0 74 3253.0 75 1929.5 76 1370.0 77 986.5 78 603.0 79 454.5 80 306.0 81 222.5 82 139.0 83 101.0 84 63.0 85 54.5 86 46.0 87 24.5 88 3.0 89 3.5 90 4.0 91 3.5 92 3.0 93 2.0 94 1.0 95 1.5 96 2.0 97 1.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 542266.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.2798773166263 #Duplication Level Percentage of deduplicated Percentage of total 1 69.13834565112718 30.614374633064152 2 10.45159795867062 9.255909507452738 3 5.771876690187836 7.667339751846374 4 3.948185845806499 6.993007395022088 5 2.814672596190535 6.2316678622893455 6 2.115271465996238 5.61983766034042 7 1.5680312463668962 4.860256185243395 8 1.11629420744988 3.954349644411302 9 0.8395156091393715 3.345628336027575 >10 2.1806331772083984 13.097487782359215 >50 0.0284145678896826 0.9009036087192681 >100 0.0213109258816967 1.9938667642908963 >500 0.0029250290425858216 0.9349488455792409 >1k 0.002507167750787847 1.9074584700329296 >5k 0.0 0.0 >10k+ 4.1786129179797457E-4 2.6229635533210605 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14176 2.614215163775712 No Hit GAATCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTTC 3495 0.6445176352564977 No Hit CGTTTCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTT 1513 0.27901435826697596 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCG 1443 0.26610556442779004 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGC 1367 0.25209030254524534 No Hit GAACTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTTCT 1293 0.2384438633438202 RNA PCR Primer, Index 40 (95% over 22bp) CGTTCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTTC 1198 0.22092478599063928 RNA PCR Primer, Index 40 (95% over 21bp) CGTTTTCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCT 983 0.18127634777028248 No Hit CGCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTTCTG 898 0.16560138382269957 Illumina PCR Primer Index 8 (95% over 22bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCC 866 0.15970022092478597 No Hit GCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTTCTGC 720 0.13277616520305532 RNA PCR Primer, Index 40 (95% over 24bp) GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 557 0.10271711669180808 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.8441134055979908E-4 0.0 0.0 0.07542423828895782 0.0 2 1.8441134055979908E-4 0.0 0.0 0.3415298027167479 0.0 3 1.8441134055979908E-4 0.0 0.0 0.6463617486620957 0.0 4 1.8441134055979908E-4 0.0 0.0 1.1557058712882606 0.0 5 1.8441134055979908E-4 0.0 0.0 2.4987736645852774 0.0 6 1.8441134055979908E-4 0.0 0.0 3.673842726632317 0.0 7 1.8441134055979908E-4 0.0 0.0 4.609545868632737 0.0 8 1.8441134055979908E-4 0.0 0.0 5.710297160434178 0.0 9 1.8441134055979908E-4 0.0 0.0 6.5543478661763785 0.0 10 1.8441134055979908E-4 0.0 0.0 7.765930373654259 0.0 11 1.8441134055979908E-4 0.0 0.0 8.615329008272692 0.0 12 1.8441134055979908E-4 0.0 0.0 9.442413870683392 0.0 13 1.8441134055979908E-4 0.0 0.0 9.78431249608126 0.0 14 1.8441134055979908E-4 0.0 0.0 10.02201871406284 0.0 15 1.8441134055979908E-4 0.0 0.0 10.221920607229663 0.0 16 1.8441134055979908E-4 0.0 0.0 10.41665898286081 0.0 17 1.8441134055979908E-4 0.0 0.0 10.612319415194756 0.0 18 1.8441134055979908E-4 0.0 0.0 10.83969859810499 0.0 19 1.8441134055979908E-4 0.0 0.0 11.065233667609624 0.0 20 3.6882268111959816E-4 0.0 0.0 11.254624114364537 0.0 21 3.6882268111959816E-4 0.0 0.0 11.448440433292886 0.0 22 3.6882268111959816E-4 0.0 0.0 11.70182161522205 0.0 23 3.6882268111959816E-4 0.0 0.0 11.935286372370756 0.0 24 5.532340216793972E-4 0.0 0.0 12.153998222274677 0.0 25 5.532340216793972E-4 0.0 0.0 12.345048371094629 0.0 26 5.532340216793972E-4 0.0 0.0 12.539233512704097 0.0 27 5.532340216793972E-4 0.0 0.0 12.752044199710106 0.0 28 5.532340216793972E-4 0.0 0.0 12.944569639254535 0.0 29 5.532340216793972E-4 0.0 0.0 13.153692099449348 0.0 30 5.532340216793972E-4 0.0 0.0 13.442664670106552 0.0 31 5.532340216793972E-4 0.0 0.0 13.66506474682167 0.0 32 5.532340216793972E-4 0.0 0.0 13.933198835995618 0.0 33 5.532340216793972E-4 0.0 0.0 14.178281507599591 0.0 34 7.376453622391963E-4 0.0 0.0 14.448444121519698 0.0 35 7.376453622391963E-4 0.0 0.0 14.750509897356649 0.0 36 7.376453622391963E-4 0.0 0.0 15.045936864933445 0.0 37 7.376453622391963E-4 0.0 0.0 15.34560529334312 0.0 38 7.376453622391963E-4 0.0 0.0 15.786717219962158 0.0 39 7.376453622391963E-4 0.0 0.0 16.379968502543033 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTAGCG 30 2.1633732E-6 45.000004 1 CGGTCTA 35 1.2103374E-7 45.000004 31 CCGATCG 20 7.029988E-4 45.0 10 TACGGAT 20 7.029988E-4 45.0 13 AATTGCG 20 7.029988E-4 45.0 1 CGTTTTT 7010 0.0 43.716118 1 CCATACG 40 3.4537152E-7 39.375 2 TATACGG 40 3.4537152E-7 39.375 2 ATGGGAC 155 0.0 39.193546 5 ACCGGTA 35 6.242186E-6 38.57143 41 TTTACGG 35 6.242186E-6 38.57143 2 TTAGACG 35 6.242186E-6 38.57143 1 TACCGGT 35 6.242186E-6 38.57143 40 GTTTTTT 7985 0.0 38.49092 2 ACGGGTA 30 1.1391267E-4 37.500004 5 GCGATAT 30 1.1391267E-4 37.500004 9 CGTAAGG 60 1.546141E-10 37.500004 2 TCGACGG 30 1.1391267E-4 37.500004 2 CGGTAGT 145 0.0 37.24138 12 TACGAAT 85 0.0 37.058826 12 >>END_MODULE