SRR2935589.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935589.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	992813
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTC	9721	0.9791370580361055	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9492	0.9560712843204108	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGC	6474	0.6520865460061462	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCG	6265	0.6310352503442239	No Hit
GAACTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTCT	2726	0.2745733587291867	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTT	2290	0.23065773715694698	No Hit
GCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTCTGC	2247	0.2263266093413362	TruSeq Adapter, Index 21 (95% over 23bp)
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1306	0.1315454169113418	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCT	1259	0.12681139348497653	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTC	1149	0.11573176418922797	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTT	1060	0.10676733684994051	No Hit
CGCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTCTG	1048	0.10555865001767706	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGGGTA	70	0.0	45.000004	5
AATCCCG	20	7.0328225E-4	45.0	25
ACGTTAG	20	7.0328225E-4	45.0	1
GTAATCG	20	7.0328225E-4	45.0	1
ACTCGAT	20	7.0328225E-4	45.0	33
CGGTATT	45	3.8380676E-10	45.0	43
GCGTAAT	30	2.1652031E-6	44.999996	1
CGTTTTT	4245	0.0	41.819786	1
CTAACGG	55	6.002665E-11	40.909092	2
CCGGTAT	50	1.0804797E-9	40.5	42
CGAATAT	85	0.0	39.705883	14
CGGGTAT	80	0.0	39.375	6
TCGTTAG	35	6.2474282E-6	38.57143	1
ATCGGCA	35	6.2474282E-6	38.57143	41
TACAACG	35	6.2474282E-6	38.57143	1
CGATGAA	550	0.0	38.454544	19
CGTTAGG	95	0.0	37.894737	2
GCGATAT	30	1.13981005E-4	37.499996	9
GCGAACC	55	2.748493E-9	36.81818	33
TATTGCG	55	2.748493E-9	36.81818	1