##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935589.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 992813 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.14040811310891 33.0 31.0 34.0 30.0 34.0 2 32.17086399956487 33.0 31.0 34.0 30.0 34.0 3 32.14036782354784 33.0 31.0 34.0 30.0 34.0 4 35.81063906294539 37.0 35.0 37.0 35.0 37.0 5 35.86722272975878 37.0 35.0 37.0 35.0 37.0 6 35.792768628130375 37.0 35.0 37.0 35.0 37.0 7 36.04297888927724 37.0 35.0 37.0 35.0 37.0 8 35.86537746786152 37.0 35.0 37.0 35.0 37.0 9 37.71268909653681 39.0 38.0 39.0 35.0 39.0 10 37.391703170687734 39.0 37.0 39.0 34.0 39.0 11 37.32698403425419 39.0 37.0 39.0 34.0 39.0 12 37.10653265015667 39.0 37.0 39.0 34.0 39.0 13 36.98350545369571 39.0 37.0 39.0 33.0 39.0 14 37.929909257836066 40.0 37.0 41.0 33.0 41.0 15 38.06683333115098 40.0 37.0 41.0 33.0 41.0 16 37.984559025717836 40.0 36.0 41.0 33.0 41.0 17 38.00741730819399 40.0 36.0 41.0 33.0 41.0 18 37.881433865189116 40.0 36.0 41.0 33.0 41.0 19 37.6999324142613 39.0 36.0 41.0 33.0 41.0 20 37.72880995716213 40.0 35.0 41.0 33.0 41.0 21 37.69803880489075 40.0 35.0 41.0 33.0 41.0 22 37.84080587180063 40.0 35.0 41.0 34.0 41.0 23 37.86597073164835 40.0 35.0 41.0 34.0 41.0 24 37.797765540942756 40.0 35.0 41.0 34.0 41.0 25 37.556705039116125 39.0 35.0 41.0 33.0 41.0 26 37.60420542438506 40.0 35.0 41.0 33.0 41.0 27 37.599773572666756 40.0 35.0 41.0 33.0 41.0 28 37.46152699450954 40.0 35.0 41.0 33.0 41.0 29 37.390654634860745 40.0 35.0 41.0 33.0 41.0 30 37.21064994112688 39.0 35.0 41.0 33.0 41.0 31 37.11970129319419 39.0 35.0 41.0 32.0 41.0 32 36.959959226964195 39.0 35.0 41.0 32.0 41.0 33 36.815908937534054 39.0 35.0 41.0 32.0 41.0 34 36.55779487174322 39.0 35.0 41.0 31.0 41.0 35 36.32463716732154 39.0 35.0 41.0 30.0 41.0 36 36.220478579551234 39.0 35.0 41.0 30.0 41.0 37 36.2382946234588 39.0 35.0 41.0 30.0 41.0 38 36.09087914843984 39.0 35.0 41.0 30.0 41.0 39 36.01036650406471 39.0 35.0 41.0 30.0 41.0 40 35.8511330935433 39.0 35.0 41.0 29.0 41.0 41 35.67199059641644 38.0 35.0 41.0 28.0 41.0 42 35.68298763211199 38.0 35.0 41.0 28.0 41.0 43 35.68089257493607 38.0 35.0 41.0 29.0 41.0 44 35.62339332784724 38.0 35.0 41.0 28.0 41.0 45 35.60471911628877 38.0 35.0 40.0 28.0 41.0 46 35.51456719442634 38.0 35.0 40.0 28.0 41.0 47 35.400180094338005 38.0 35.0 40.0 28.0 41.0 48 35.30114331701942 37.0 35.0 40.0 27.0 41.0 49 35.26826703518185 37.0 35.0 40.0 27.0 41.0 50 35.14174673377565 37.0 34.0 40.0 27.0 41.0 51 34.00911652043235 36.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 3.0 8 16.0 9 22.0 10 28.0 11 41.0 12 35.0 13 36.0 14 45.0 15 73.0 16 97.0 17 183.0 18 360.0 19 672.0 20 1320.0 21 2069.0 22 3202.0 23 4394.0 24 5939.0 25 8705.0 26 11852.0 27 13351.0 28 13991.0 29 14560.0 30 16322.0 31 20114.0 32 26369.0 33 38307.0 34 75585.0 35 81844.0 36 71684.0 37 102696.0 38 176017.0 39 302673.0 40 208.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.83193310321279 19.36316305286091 22.492654709396433 15.312249134529864 2 32.96975361926163 26.92501004720929 23.558313599842066 16.54692273368701 3 29.976037783550375 26.4459671660222 27.705217397435366 15.872777652992054 4 26.741188924802557 23.359081720323967 31.334601783014527 18.565127571858948 5 27.100068190082123 27.298091382767954 26.612363053263806 18.989477373886118 6 24.586704646292905 33.88885923129532 26.589800899061554 14.934635223350218 7 76.01602718739582 5.376037582102571 14.204185481052322 4.403749749449292 8 77.27155063440951 6.995879385141008 11.220844207317993 4.511725773131496 9 72.06321835028349 6.015735088078017 12.848441750863456 9.07260481077504 10 44.14960319818536 20.91330391523882 19.668759373618194 15.268333512957627 11 33.4861650683462 22.97129469497277 25.08951836851451 18.453021868166513 12 29.01321799774983 19.996716400772353 30.461325546704167 20.52874005477366 13 27.043662804576492 20.084749091722205 33.86176450147208 19.009823602229222 14 21.412693024769013 24.522442796377568 33.199303393489004 20.865560785364416 15 20.05010006919732 22.75040717637662 36.927397203703016 20.272095550723044 16 26.06523081385921 22.527605903629386 30.06920739353735 21.337955888974054 17 26.04780557869407 23.424350809266194 28.941704026840902 21.586139585198826 18 26.58657773417552 22.471905585442574 29.982282665517072 20.959234014864833 19 25.55919392675156 25.396021204395996 27.467609710992907 21.57717515785954 20 25.96783079995931 26.459766340690543 28.76634371226001 18.80605914709014 21 24.891193004120616 26.339502000880326 30.366947249884923 18.402357745114134 22 23.881738051375233 21.91560747089331 32.20364761541197 21.99900686231949 23 23.185332988186094 24.351514333514974 31.747166888427124 20.71598578987181 24 24.40570379316145 24.02909712100869 29.67577982963559 21.889419256194266 25 24.865609132837704 25.72115796227487 27.274219817830748 22.13901308705668 26 22.468783144459227 23.322720391453373 28.975144362533527 25.23335210155387 27 22.514209624571798 23.759056337900493 30.2201925236676 23.506541513860114 28 21.374115770039275 24.69014809435412 29.892134772610753 24.04360136299585 29 23.121373309978818 26.4202825708366 28.38590953180508 22.072434587379497 30 24.643311479603913 25.467736623110294 29.336138829769553 20.55281306751624 31 27.07156332562124 23.554687539345274 27.643372921184557 21.73037621384893 32 28.216089031872066 24.46069904402944 26.437909253807113 20.885302670291384 33 28.255774249531385 23.080479405487235 26.33517087306472 22.328575471916665 34 25.933483949142488 24.54399771155293 28.92065273117898 20.6018656081256 35 23.82069936634593 26.894289256889266 28.775912483015432 20.50909889374938 36 25.670393115319808 27.665028560262606 27.26142788218929 19.403150442228295 37 23.89130682213065 27.04849755190554 27.312998520365873 21.74719710559793 38 26.07953360804099 25.676235101675744 26.398123312245104 21.84610797803816 39 25.475190191909252 23.892011889449474 26.851985217760046 23.780812700881235 40 26.102901553464754 22.984187354516912 29.26442341105525 21.648487680963083 41 22.962028095925415 24.267107703061903 28.896982614047158 23.87388158696552 42 21.929205197756275 24.142713683241457 31.135168455691055 22.792912663311217 43 22.843274614655527 23.414076971191957 29.68111819647809 24.061530217674427 44 23.79048219553934 22.972402657902343 28.644367066104092 24.592748080454225 45 22.645150698067006 22.556815835409086 28.170259656148737 26.627773810375167 46 24.21644358000953 24.637167321539906 27.58978780495421 23.556601293496357 47 21.582614248604724 24.19146405214275 31.580569553380144 22.645352145872387 48 21.768752020773295 25.17624164872942 29.36484514203581 23.690161188461474 49 23.200643021394765 23.325641384631346 30.607375205602665 22.866340388371224 50 22.198339465740276 23.72914133880197 30.1351815497984 23.937337645659355 51 21.659466586356142 23.766006287186006 28.899601435517063 25.674925690940793 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 511.0 1 1321.0 2 2131.0 3 8606.0 4 15081.0 5 9649.5 6 4218.0 7 4112.5 8 4007.0 9 4039.5 10 4072.0 11 3980.5 12 3889.0 13 3809.5 14 3730.0 15 3534.0 16 3338.0 17 3316.5 18 3295.0 19 3101.5 20 2908.0 21 3070.5 22 3233.0 23 3597.0 24 3961.0 25 4575.5 26 6404.0 27 7618.0 28 8395.0 29 9172.0 30 10730.5 31 12289.0 32 14847.5 33 17406.0 34 19875.5 35 22345.0 36 23798.0 37 25251.0 38 28350.5 39 31450.0 40 33111.5 41 34773.0 42 38101.0 43 41429.0 44 45698.5 45 49968.0 46 71282.0 47 92596.0 48 85266.5 49 77937.0 50 78465.5 51 78994.0 52 73108.0 53 67222.0 54 65012.5 55 62803.0 56 62197.0 57 61591.0 58 59154.5 59 56718.0 60 52152.0 61 47586.0 62 44249.0 63 40912.0 64 36257.0 65 31602.0 66 27050.0 67 22498.0 68 19114.5 69 15731.0 70 12863.0 71 9995.0 72 8261.5 73 6528.0 74 5536.0 75 3403.5 76 2263.0 77 1667.5 78 1072.0 79 826.5 80 581.0 81 385.0 82 189.0 83 161.5 84 134.0 85 81.0 86 28.0 87 20.0 88 12.0 89 9.0 90 6.0 91 4.5 92 3.0 93 1.5 94 0.0 95 0.5 96 1.0 97 1.5 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 992813.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.67727792932558 #Duplication Level Percentage of deduplicated Percentage of total 1 73.20228614943034 20.992423049692345 2 8.41289033599903 4.82517588708763 3 3.2941750213170575 2.834039179024539 4 1.8864699756924574 2.163952951930427 5 1.299872865364435 1.8638407716422358 6 1.027040084505492 1.7671628368753214 7 0.8705748251661769 1.7476001353695136 8 0.7387067743952738 1.69472795820871 9 0.6617103643567959 1.7078446824637616 >10 8.41795715482448 50.876336897233465 >50 0.15051185142687634 2.625426874926239 >100 0.02967837562444398 1.5322750098008693 >500 0.0038864539508194533 0.8060072540477967 >1k 0.0028265119642323297 1.3257831450930762 >5k 0.0014132559821161648 3.2374033666040485 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTC 9721 0.9791370580361055 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9492 0.9560712843204108 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGC 6474 0.6520865460061462 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCG 6265 0.6310352503442239 No Hit GAACTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTCT 2726 0.2745733587291867 No Hit GAATGCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTT 2290 0.23065773715694698 No Hit GCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTCTGC 2247 0.2263266093413362 TruSeq Adapter, Index 21 (95% over 23bp) GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 1306 0.1315454169113418 No Hit GAATGACTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCT 1259 0.12681139348497653 No Hit GAATGATCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTC 1149 0.11573176418922797 No Hit CGTTTCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTT 1060 0.10676733684994051 No Hit CGCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTCTG 1048 0.10555865001767706 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.0289561075449256E-4 0.0 0.0 0.08067984605358713 0.0 2 5.036195134431157E-4 0.0 0.0 0.4625241611461574 0.0 3 6.043434161317388E-4 0.0 0.0 0.7036571841827212 0.0 4 6.043434161317388E-4 0.0 0.0 1.2062694585989506 0.0 5 6.043434161317388E-4 0.0 0.0 2.77403700394737 0.0 6 6.043434161317388E-4 0.0 0.0 3.7124816052972713 0.0 7 6.043434161317388E-4 0.0 0.0 4.358726164947478 0.0 8 6.043434161317388E-4 0.0 0.0 5.153840652771469 0.0 9 6.043434161317388E-4 0.0 0.0 5.609314140729422 0.0 10 7.050673188203619E-4 0.0 0.0 6.888104809264182 0.0 11 8.057912215089851E-4 0.0 0.0 7.6017336598130765 0.0 12 8.057912215089851E-4 0.0 0.0 8.79692348911628 0.0 13 8.057912215089851E-4 0.0 0.0 9.104836459635399 0.0 14 8.057912215089851E-4 0.0 0.0 9.299636487435198 0.0 15 8.057912215089851E-4 0.0 0.0 9.550036109519114 0.0 16 8.057912215089851E-4 0.0 0.0 9.81373128675793 0.0 17 8.057912215089851E-4 0.0 0.0 10.106434947971069 0.0 18 8.057912215089851E-4 0.0 0.0 10.437212244400506 0.0 19 8.057912215089851E-4 0.0 0.0 10.771011257910603 0.0 20 8.057912215089851E-4 0.0 0.0 11.028562277085413 0.0 21 8.057912215089851E-4 0.0 0.0 11.310387756808181 0.0 22 8.057912215089851E-4 0.0 0.0 11.662417796704919 0.0 23 8.057912215089851E-4 0.0 0.0 11.944545448135752 0.0 24 9.065151241976082E-4 0.0 0.0 12.19272914436052 0.0 25 9.065151241976082E-4 0.0 0.0 12.427617285430388 0.0 26 9.065151241976082E-4 0.0 0.0 12.685974095826706 0.0 27 9.065151241976082E-4 0.0 0.0 12.985023362909228 0.0 28 9.065151241976082E-4 0.0 0.0 13.232099096204422 0.0 29 0.0010072390268862314 0.0 0.0 13.509996343722332 0.0 30 0.0010072390268862314 0.0 0.0 13.878242931951938 0.0 31 0.0010072390268862314 0.0 0.0 14.145362721882167 0.0 32 0.0010072390268862314 0.0 0.0 14.446426467018462 0.0 33 0.0011079629295748545 0.0 0.0 14.73691420237245 0.0 34 0.0011079629295748545 0.0 0.0 15.03324392408238 0.0 35 0.0011079629295748545 0.0 0.0 15.34790539608164 0.0 36 0.0011079629295748545 0.0 0.0 15.634867794841526 0.0 37 0.0011079629295748545 0.0 0.0 15.951241573186492 0.0 38 0.0011079629295748545 0.0 0.0 16.365720432750177 0.0 39 0.0011079629295748545 0.0 0.0 17.055880613972622 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGGGTA 70 0.0 45.000004 5 AATCCCG 20 7.0328225E-4 45.0 25 ACGTTAG 20 7.0328225E-4 45.0 1 GTAATCG 20 7.0328225E-4 45.0 1 ACTCGAT 20 7.0328225E-4 45.0 33 CGGTATT 45 3.8380676E-10 45.0 43 GCGTAAT 30 2.1652031E-6 44.999996 1 CGTTTTT 4245 0.0 41.819786 1 CTAACGG 55 6.002665E-11 40.909092 2 CCGGTAT 50 1.0804797E-9 40.5 42 CGAATAT 85 0.0 39.705883 14 CGGGTAT 80 0.0 39.375 6 TCGTTAG 35 6.2474282E-6 38.57143 1 ATCGGCA 35 6.2474282E-6 38.57143 41 TACAACG 35 6.2474282E-6 38.57143 1 CGATGAA 550 0.0 38.454544 19 CGTTAGG 95 0.0 37.894737 2 GCGATAT 30 1.13981005E-4 37.499996 9 GCGAACC 55 2.748493E-9 36.81818 33 TATTGCG 55 2.748493E-9 36.81818 1 >>END_MODULE