SRR2935588.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935588.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	756835
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGC	5303	0.7006811260050076	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCG	5283	0.6980385420864521	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTC	4138	0.5467506127491462	No Hit
GCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGC	2186	0.28883442229812306	TruSeq Adapter, Index 14 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1941	0.25646276929581746	No Hit
CCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGC	1414	0.18683068304187836	TruSeq Adapter, Index 14 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGCGTGTTT	1002	0.13239345431963373	No Hit
CTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGCT	916	0.1210303434698448	TruSeq Adapter, Index 21 (95% over 22bp)
GCTAAAGGTGTAATTTGAAATGGCCTTCGGGTAAATGCAAGATACTTAACT	866	0.11442388367345592	No Hit
GAACTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCT	794	0.10491058156665589	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCT	780	0.10306077282366698	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTT	780	0.10306077282366698	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAACGCG	25	3.889539E-5	45.0	1
TAACCGA	20	7.031759E-4	45.0	40
CAATGCG	20	7.031759E-4	45.0	1
TAGGCGT	20	7.031759E-4	45.0	1
CGACTAA	25	3.889539E-5	45.0	15
CGTCCAA	20	7.031759E-4	45.0	14
CGAATAT	120	0.0	43.125004	14
AATGCGG	80	0.0	42.1875	2
TTGCGAG	70	0.0	41.785717	1
CGGTAGT	120	0.0	41.250004	12
CGACGGT	55	6.002665E-11	40.909092	28
TTACGGG	110	0.0	40.909092	3
TCGTCCC	90	0.0	40.0	38
TATAGCG	45	1.9268555E-8	40.0	1
TACGAAT	130	0.0	39.807693	12
GCTACGA	130	0.0	39.807693	10
TTAGCGG	75	0.0	39.000004	2
TACGGCT	625	0.0	38.879997	7
TCGCCTA	35	6.24546E-6	38.57143	31
ATAGCGG	105	0.0	38.57143	2