##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935587.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 606890 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.214122822916835 33.0 31.0 34.0 30.0 34.0 2 32.204570844798894 33.0 31.0 34.0 30.0 34.0 3 32.21812354792466 34.0 31.0 34.0 30.0 34.0 4 35.854128425250046 37.0 35.0 37.0 35.0 37.0 5 35.930292145199296 37.0 35.0 37.0 35.0 37.0 6 35.873703636573346 37.0 35.0 37.0 35.0 37.0 7 36.121158694326816 37.0 35.0 37.0 35.0 37.0 8 35.931257723804976 37.0 35.0 37.0 35.0 37.0 9 37.74293034981628 39.0 38.0 39.0 35.0 39.0 10 37.40064262057375 39.0 37.0 39.0 34.0 39.0 11 37.39595149038541 39.0 37.0 39.0 35.0 39.0 12 37.32945179521824 39.0 37.0 39.0 35.0 39.0 13 37.2926873074198 39.0 37.0 39.0 34.0 39.0 14 38.459539620029986 40.0 38.0 41.0 34.0 41.0 15 38.581540312082915 40.0 38.0 41.0 35.0 41.0 16 38.36322727347625 40.0 38.0 41.0 34.0 41.0 17 38.4240867373 40.0 38.0 41.0 34.0 41.0 18 38.34873700341083 40.0 37.0 41.0 34.0 41.0 19 38.23135329301851 40.0 37.0 41.0 34.0 41.0 20 38.38141837894841 40.0 37.0 41.0 34.0 41.0 21 38.31932640181911 40.0 37.0 41.0 34.0 41.0 22 38.42537527393762 40.0 37.0 41.0 34.0 41.0 23 38.442661767371355 40.0 37.0 41.0 34.0 41.0 24 38.37473182949134 40.0 37.0 41.0 34.0 41.0 25 38.10528761390038 40.0 37.0 41.0 34.0 41.0 26 38.19995056764817 40.0 37.0 41.0 34.0 41.0 27 38.20331361531744 40.0 37.0 41.0 34.0 41.0 28 38.080680189161136 40.0 37.0 41.0 34.0 41.0 29 38.02713177017252 40.0 37.0 41.0 34.0 41.0 30 37.88647036530508 40.0 36.0 41.0 34.0 41.0 31 37.87158957966024 40.0 36.0 41.0 34.0 41.0 32 37.880780701609844 40.0 36.0 41.0 34.0 41.0 33 37.83212938094218 40.0 36.0 41.0 34.0 41.0 34 37.76589497272982 40.0 36.0 41.0 33.0 41.0 35 37.70740167081349 40.0 36.0 41.0 33.0 41.0 36 37.58083342945179 40.0 36.0 41.0 33.0 41.0 37 37.55111469953369 40.0 36.0 41.0 33.0 41.0 38 37.44417439733724 40.0 36.0 41.0 33.0 41.0 39 37.375628202804464 40.0 36.0 41.0 33.0 41.0 40 37.2853910922902 40.0 35.0 41.0 33.0 41.0 41 37.13492230882038 40.0 35.0 41.0 32.0 41.0 42 37.13405394717329 40.0 35.0 41.0 32.0 41.0 43 37.0649310418692 40.0 35.0 41.0 32.0 41.0 44 36.96058264265353 39.0 35.0 41.0 32.0 41.0 45 36.968139201502744 39.0 35.0 41.0 32.0 41.0 46 36.829260656791185 39.0 35.0 41.0 32.0 41.0 47 36.762199080558254 39.0 35.0 41.0 31.0 41.0 48 36.66565275420587 39.0 35.0 41.0 31.0 41.0 49 36.58780339105934 39.0 35.0 41.0 31.0 41.0 50 36.479286196839624 39.0 35.0 41.0 31.0 41.0 51 35.328562012885364 37.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 10.0 9 12.0 10 16.0 11 18.0 12 17.0 13 16.0 14 22.0 15 28.0 16 45.0 17 75.0 18 125.0 19 238.0 20 409.0 21 677.0 22 1053.0 23 1496.0 24 2224.0 25 2903.0 26 3945.0 27 4693.0 28 5280.0 29 6200.0 30 7474.0 31 9447.0 32 12450.0 33 17353.0 34 33380.0 35 46970.0 36 40261.0 37 62681.0 38 116053.0 39 231170.0 40 148.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.70413089686764 20.223269455749808 23.916690009721698 12.15590963766086 2 32.09444874688988 24.71551681523835 25.432780240241232 17.75725419763054 3 33.235017878033915 23.726210680683486 26.220402379343867 16.818369061938736 4 29.952380167740444 25.36093855558668 25.449587239862247 19.237094036810625 5 26.320585279045627 29.710820741814825 24.005503468503353 19.963090510636196 6 25.999934090197563 35.14607259964738 23.765591787638616 15.088401522516437 7 79.46448285521264 6.91492692250655 9.198701576892024 4.421888645388786 8 79.89223747301818 6.645355830545897 8.52411474896604 4.938291947469888 9 72.87795152334031 8.887772083903178 11.502249172008106 6.732027220748406 10 39.112854059219956 27.90456260607359 18.51571124915553 14.466872085550925 11 30.345202590255237 27.01741666529355 24.77994364711892 17.8574370973323 12 28.902437014945047 23.51282769529898 28.32078300845293 19.263952281303037 13 25.334080311094265 24.969928652638863 29.89273179653644 19.803259239730426 14 20.186854289904264 29.218474517622635 29.200843645471174 21.39382754700193 15 19.90953879615746 27.011155234062183 33.986389625797095 19.09291634398326 16 22.21143864621266 25.561469129496285 32.262024419581806 19.965067804709253 17 21.97564632800013 25.076372983571982 28.385209840333502 24.562770848094384 18 23.292853729670945 25.327983654368996 29.431692728501048 21.94746988745901 19 24.925109986982815 26.36606304272603 27.809982039578834 20.898844930712322 20 26.60465652754206 25.257624940269242 28.118110365964178 20.019608166224522 21 25.096640247820858 26.050519863566706 28.108882993623226 20.743956894989207 22 22.987691344395195 25.992024913905322 27.02977475325018 23.990508988449307 23 23.14224983110613 26.72230552488919 27.973767898630726 22.161676745373956 24 22.560431050107926 25.294534429633046 29.182059351777095 22.962975168481933 25 22.073192835604473 26.36589826821994 28.2515777158958 23.309331180279788 26 21.56024979815123 27.897477302311785 27.89681820428743 22.64545469524955 27 22.90678706190578 27.720674257278915 27.853812058198358 21.51872662261695 28 21.023084908302987 27.383216068809833 29.536983637891545 22.056715384995634 29 21.923248035064013 26.240504869086656 29.980062284763303 21.85618481108603 30 23.25396694623408 25.810278633689798 29.25192374235858 21.683830677717545 31 23.061015999604543 26.844897757418973 27.1930662887838 22.901019954192687 32 23.125113282472938 27.404801529107413 28.59249616899273 20.877589019426914 33 23.616965183146863 26.543525185783256 27.37019888282885 22.469310748241032 34 21.351480498937203 25.811926378750677 30.15521758473529 22.681375537576827 35 22.411969220122263 24.940928339567304 29.42114716011139 23.22595528019905 36 23.08622649903607 26.26505627049383 28.393283791131836 22.255433439338265 37 22.14470497124685 26.920529255713554 29.219298390153075 21.71546738288652 38 21.698001285241148 26.762016180856495 28.079717906045577 23.460264627856777 39 23.19777883965793 24.42040567483399 29.196559508312873 23.185255977195208 40 23.817990080574734 23.950468783469823 30.75845705152499 21.473084084430457 41 20.506846380727975 25.814397996342002 29.704559310583466 23.974196312346553 42 21.235808795663136 26.517655588327372 29.10741650051904 23.139119115490452 43 23.089851538170013 25.834500486084792 28.16573019822373 22.909917777521464 44 21.607869630410782 26.52638863715006 28.05022326945575 23.815518462983405 45 21.981248661207136 25.402956054639226 27.87819868509944 24.737596599054193 46 22.688625615844714 26.534627362454483 28.272504078169025 22.50424294353178 47 22.041885679447677 25.251363509037883 30.035756067821183 22.670994743693257 48 22.171068892220998 24.531298917431496 29.206775527690354 24.090856662657153 49 20.586597241674767 24.551071858162103 30.657615053798875 24.204715846364248 50 20.41902156898285 24.916212163654038 30.313895434098438 24.350870833264675 51 20.90823707755936 24.807131440623508 28.6556048048246 25.629026676992535 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 323.0 1 782.0 2 1241.0 3 1896.0 4 2551.0 5 1843.0 6 1135.0 7 1103.5 8 1072.0 9 1104.5 10 1137.0 11 1214.5 12 1292.0 13 1259.5 14 1227.0 15 1310.5 16 1394.0 17 1393.5 18 1393.0 19 1587.0 20 1781.0 21 2217.5 22 2654.0 23 2847.0 24 3040.0 25 3811.0 26 5661.0 27 6740.0 28 7655.5 29 8571.0 30 10457.0 31 12343.0 32 13514.5 33 14686.0 34 16170.5 35 17655.0 36 18996.0 37 20337.0 38 21407.0 39 22477.0 40 26053.5 41 29630.0 42 32706.0 43 35782.0 44 38657.5 45 41533.0 46 45815.5 47 50098.0 48 52351.0 49 54604.0 50 52652.0 51 50700.0 52 45573.5 53 40447.0 54 36479.5 55 32512.0 56 30122.0 57 27732.0 58 27882.5 59 28033.0 60 26463.0 61 24893.0 62 23301.0 63 21709.0 64 18711.5 65 15714.0 66 12625.5 67 9537.0 68 8003.5 69 6470.0 70 5201.5 71 3933.0 72 3232.5 73 2532.0 74 2106.5 75 1369.0 76 1057.0 77 721.5 78 386.0 79 271.0 80 156.0 81 111.5 82 67.0 83 50.5 84 34.0 85 22.5 86 11.0 87 7.5 88 4.0 89 3.0 90 2.0 91 1.0 92 0.0 93 0.5 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 606890.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.134337248052304 #Duplication Level Percentage of deduplicated Percentage of total 1 73.56338245895432 19.96093628748722 2 9.863871446239836 5.352992287874103 3 3.402621912055793 2.7698367146800336 4 1.6983985433972744 1.8433967543256973 5 1.0392533837174587 1.4099725899984514 6 0.7599367200554531 1.2372227549498027 7 0.5954881969724003 1.1310724294718595 8 0.5016376144934444 1.0889283366378855 9 0.4415378246543468 1.0782752617748188 >10 7.529666220041754 50.732499290252285 >50 0.5353103799484766 8.755210973065777 >100 0.062188677397203435 3.069998299897616 >500 0.004877543325270857 0.8511688986890787 >1k 0.0018290787469765716 0.7184891208953681 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCGTCTTCTGC 1555 0.25622435696748996 TruSeq Adapter, Index 23 (95% over 24bp) CCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCGTCTTCTGC 1502 0.24749130814480386 TruSeq Adapter, Index 23 (95% over 24bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1286 0.21190001482970555 No Hit CTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCGTCTTCTGCT 991 0.16329153553362225 Illumina PCR Primer Index 5 (95% over 24bp) GAATGATACCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCG 672 0.11072846809141691 No Hit GAATCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCGTCTTC 628 0.10347838982352651 TruSeq Adapter, Index 23 (95% over 21bp) AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 625 0.10298406630526126 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGC 624 0.10281929179917282 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.1693881922588937 0.0 2 0.0 0.0 0.0 0.8706684901712007 0.0 3 0.0 0.0 0.0 1.1662739540938225 0.0 4 0.0 0.0 0.0 1.53734614180494 0.0 5 0.0 0.0 0.0 2.5096805022326945 0.0 6 0.0 0.0 0.0 3.1430737036365732 0.0 7 0.0 0.0 0.0 3.667550956516008 0.0 8 0.0 0.0 0.0 4.428314851126234 0.0 9 0.0 0.0 0.0 4.693437031422499 0.0 10 0.0 0.0 0.0 5.4322859167229645 0.0 11 0.0 0.0 0.0 6.330142200398754 0.0 12 0.0 0.0 0.0 7.168514887376625 0.0 13 0.0 0.0 0.0 7.547331476873898 0.0 14 0.0 0.0 0.0 7.735339188320783 0.0 15 0.0 0.0 0.0 8.011995584043238 0.0 16 0.0 0.0 0.0 8.577501688938687 0.0 17 0.0 0.0 0.0 9.197712929855493 0.0 18 0.0 0.0 0.0 9.956499530392657 0.0 19 0.0 0.0 0.0 10.395623589118292 0.0 20 0.0 0.0 0.0 10.81876452075335 0.0 21 0.0 0.0 0.0 11.349503204864144 0.0 22 0.0 0.0 0.0 11.910560398095207 0.0 23 0.0 0.0 0.0 12.441134307699913 0.0 24 0.0 0.0 0.0 12.875974229267248 0.0 25 0.0 0.0 0.0 13.25808630888629 0.0 26 0.0 0.0 0.0 13.615811761604245 0.0 27 0.0 0.0 0.0 14.013577419301686 0.0 28 1.64774506088418E-4 0.0 0.0 14.397007694969433 0.0 29 1.64774506088418E-4 0.0 0.0 14.80482459753827 0.0 30 1.64774506088418E-4 0.0 0.0 15.263556822488425 0.0 31 3.29549012176836E-4 0.0 0.0 15.67961245036168 0.0 32 3.29549012176836E-4 0.0 0.0 16.09599762724711 0.0 33 3.29549012176836E-4 0.0 0.0 16.51254757863863 0.0 34 3.29549012176836E-4 0.0 0.0 16.933546441694542 0.0 35 3.29549012176836E-4 0.0 0.0 17.363278353573136 0.0 36 4.94323518265254E-4 0.0 0.0 17.787078383232547 0.0 37 4.94323518265254E-4 0.0 0.0 18.205935177709303 0.0 38 4.94323518265254E-4 0.0 0.0 18.60024057077889 0.0 39 4.94323518265254E-4 0.0 0.0 19.024370149450476 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTAGCG 30 2.1638007E-6 45.000004 1 CCCCGAT 30 2.1638007E-6 45.000004 40 CGTAAGG 35 1.2106648E-7 45.000004 2 CACAACG 45 3.8380676E-10 45.000004 12 TGCGTAG 45 3.8380676E-10 45.000004 1 CCCGATC 30 2.1638007E-6 45.000004 41 CGTCGAC 20 7.0306525E-4 45.0 16 CAGTCGA 25 3.8886217E-5 45.0 12 CGACTAG 25 3.8886217E-5 45.0 24 TCGACGG 50 2.1827873E-11 45.0 2 TATAACG 20 7.0306525E-4 45.0 18 CGATAGA 20 7.0306525E-4 45.0 10 TAATGCG 20 7.0306525E-4 45.0 1 ACGACTA 20 7.0306525E-4 45.0 23 TACCGGT 20 7.0306525E-4 45.0 40 ACACGAC 75 0.0 42.0 26 CACGACC 75 0.0 42.0 27 TTGTGCG 70 0.0 41.785717 1 GGCGATA 180 0.0 41.250004 8 ACGCCGG 95 0.0 40.263157 27 >>END_MODULE