SRR2935585.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935585.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	686739
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2295	0.33418809766155705	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCTTC	1264	0.18405828123930634	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGC	1132	0.16483700503393572	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCG	1118	0.16279838483033582	No Hit
GCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCTTCTGC	829	0.12071543919888052	TruSeq Adapter, Index 22 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCGTCA	20	7.0313E-4	45.000004	44
CCGGCAT	20	7.0313E-4	45.000004	33
ATCTCGA	30	2.1642209E-6	44.999996	28
ACGGGTA	150	0.0	42.0	5
TACGGGT	125	0.0	41.399998	4
AACACGT	165	0.0	40.90909	41
ATAGCGG	50	1.0804797E-9	40.500004	2
GCGAGAC	190	0.0	40.263157	21
CACGACC	180	0.0	40.0	27
GCGTTAG	40	3.455516E-7	39.375004	1
GTTCGCC	40	3.455516E-7	39.375004	22
CTACGAA	75	0.0	39.0	11
TACGAAT	75	0.0	39.0	12
GCGATCA	70	0.0	38.571426	9
TCACGAC	30	1.13944334E-4	37.499996	25
ATTACGG	30	1.13944334E-4	37.499996	2
CGATGAC	30	1.13944334E-4	37.499996	10
CGGTCTA	30	1.13944334E-4	37.499996	31
TAGTGCG	30	1.13944334E-4	37.499996	1
TACGTAG	30	1.13944334E-4	37.499996	1