SRR2935583.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935583.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	662953
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCG	10210	1.5400790101259063	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGC	10080	1.5204697768921778	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTC	9063	1.3670652369021634	No Hit
GCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGC	2750	0.41481070302117945	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2229	0.33622292983062146	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCT	1956	0.29504354003979166	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTTGGTCAT	1883	0.2840322013777749	No Hit
GAACTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCT	1869	0.281920437798758	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTC	1409	0.21253392020248793	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTTGGTCATCGTA	1303	0.19654485310421707	No Hit
CCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGC	1005	0.1515944569222856	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTT	946	0.14269488183928572	No Hit
CTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGCT	856	0.1291192588313199	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAAAGG	65	0.0	45.000004	2
AAGTACG	20	7.031125E-4	45.0	1
GCAACCG	20	7.031125E-4	45.0	12
GGCGTGA	25	3.889014E-5	45.0	8
TAGCGCG	20	7.031125E-4	45.0	1
TTCGTAG	35	1.210883E-7	45.0	1
TCGATTA	25	3.889014E-5	45.0	41
GCTACGA	35	1.210883E-7	45.0	10
CGGTATA	20	7.031125E-4	45.0	26
ATCGACG	20	7.031125E-4	45.0	1
GACTACG	20	7.031125E-4	45.0	12
CGTTCGG	30	2.1641063E-6	44.999996	2
CCGATGA	670	0.0	43.320896	18
CGATGAA	715	0.0	41.853146	19
CGTTTTT	1380	0.0	40.923912	1
CGTTAGG	55	6.002665E-11	40.909092	2
GATGAAT	755	0.0	40.5298	20
CACCGAG	125	0.0	39.6	16
TTGTGCG	40	3.4552613E-7	39.375	1
GCGTTAG	40	3.4552613E-7	39.375	1