SRR2935582.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935582.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	409992
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGC	3199	0.7802591270073562	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCG	3030	0.7390388105133758	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTC	2020	0.4926925403422506	No Hit
GCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC	1751	0.4270815040293469	No Hit
CCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC	1536	0.37464145641866187	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	946	0.23073620948701437	No Hit
CTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGCT	834	0.20341860328982028	Illumina Single End Adapter 1 (95% over 21bp)
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	560	0.13658803098597047	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCC	519	0.1265878358602119	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGATGGGTT	505	0.12317313508556264	No Hit
TCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC	480	0.11707545513083183	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGATGGGTTCGTA	429	0.10463618802318093	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCT	420	0.10244102323947785	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	419	0.10219711604128862	No Hit
ACTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC	415	0.10122148724853168	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	30	2.1620726E-6	45.000004	25
CAATTGG	30	2.1620726E-6	45.000004	2
CACGACG	30	2.1620726E-6	45.000004	26
CGCTAGG	30	2.1620726E-6	45.000004	2
CGAATAT	30	2.1620726E-6	45.000004	14
CGGTCTA	30	2.1620726E-6	45.000004	31
AGTCGTG	30	2.1620726E-6	45.000004	1
AACCGAG	20	7.0279714E-4	45.0	20
GCCTTAA	25	3.8864007E-5	45.0	33
CCCTCGT	40	6.7957444E-9	45.0	14
CGAAAGG	25	3.8864007E-5	45.0	2
CGAAAAC	20	7.0279714E-4	45.0	16
CCAATAG	25	3.8864007E-5	45.0	14
GCACGAT	20	7.0279714E-4	45.0	19
CACGATA	20	7.0279714E-4	45.0	20
GCGCACA	20	7.0279714E-4	45.0	13
CGTTAGG	35	1.2093733E-7	45.0	2
TGCGCTA	25	3.8864007E-5	45.0	30
TAACCCG	20	7.0279714E-4	45.0	37
ACGGCAA	25	3.8864007E-5	45.0	42