SRR2935579.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935579.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	187796
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCG	1342	0.7146052099086243	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGC	1307	0.6959679652388763	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTC	1013	0.5394151100129928	No Hit
CCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC	754	0.4014994994568574	No Hit
GCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC	733	0.3903171526550086	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	639	0.3402628383991139	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCC	460	0.24494664423097404	No Hit
CTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGCT	283	0.15069543547253403	No Hit
TCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC	266	0.141643059490085	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCGAATCAT	258	0.13738311785128543	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	244	0.12992821998338622	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCT	241	0.1283307418688364	No Hit
ACTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC	235	0.12513578563973674	No Hit
AGTTAGGGGATTTGGAGAAAGAAGATTAGAAAATGGAAGTGAAAGACGAAG	217	0.11555091695243774	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCGAATCATCGTA	207	0.11022598990393832	No Hit
TAAGAAAGCGTTCAAGCTCAACACCCACTACCTAAAAAATCCCAAACATAT	199	0.10596604826513877	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTC	190	0.10117361392148927	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGGG	20	7.0181995E-4	45.0	3
AGCACAA	20	7.0181995E-4	45.0	34
GTTGATC	20	7.0181995E-4	45.0	16
ATCCTGC	20	7.0181995E-4	45.0	20
AGCGTTC	35	1.2046803E-7	45.0	7
TGCCCGT	25	3.8783048E-5	45.0	31
ACTGCGA	20	7.0181995E-4	45.0	17
GAGCTTA	20	7.0181995E-4	45.0	26
CCCTCGT	25	3.8783048E-5	45.0	25
CGTATGG	25	3.8783048E-5	45.0	2
GCGGTTT	20	7.0181995E-4	45.0	19
CGACGGG	25	3.8783048E-5	45.0	3
CATGCGG	20	7.0181995E-4	45.0	2
CCCTAAT	20	7.0181995E-4	45.0	26
AGCCCAT	20	7.0181995E-4	45.0	15
CTATAGG	25	3.8783048E-5	45.0	2
AACTTCC	20	7.0181995E-4	45.0	19
AACCACG	20	7.0181995E-4	45.0	1
CTCCCGC	25	3.8783048E-5	45.0	16
TCGGGCC	20	7.0181995E-4	45.0	17