SRR2935578.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935578.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	840697
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGC	6894	0.8200338528625651	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCG	6149	0.7314169076373533	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTC	5678	0.6753919664278568	No Hit
GCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTCTGC	3447	0.41001692643128257	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2178	0.25907074724900886	No Hit
CCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTCTGC	2004	0.23837363520983185	No Hit
CTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTCTGCT	1559	0.18544136591423543	Illumina Single End Adapter 2 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCT	1287	0.15308725973805068	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCCTCATGAT	1143	0.13595861529183523	No Hit
GAACTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTCT	1087	0.12929747578497366	No Hit
TCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTCTGC	1014	0.12061420464210054	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCC	996	0.11847312408632361	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCCTCATGATCGTA	928	0.11038459754227742	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTC	880	0.10467504939353893	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGCTC	20	7.032203E-4	45.000004	32
AGTCCGT	20	7.032203E-4	45.000004	14
AATTTCG	20	7.032203E-4	45.000004	37
GTCGAGA	20	7.032203E-4	45.000004	2
CAACCGA	20	7.032203E-4	45.000004	24
GTTAACG	20	7.032203E-4	45.000004	1
TACGAGA	20	7.032203E-4	45.000004	1
CGTACCG	20	7.032203E-4	45.000004	2
ACGTAAG	35	1.2114106E-7	45.000004	1
ACGACAG	20	7.032203E-4	45.000004	1
CCGATCG	25	3.889908E-5	45.0	40
TGTACCG	25	3.889908E-5	45.0	1
TCGCGCG	25	3.889908E-5	45.0	1
CGTTTCA	70	0.0	41.785717	11
CGTTTTT	1415	0.0	40.865723	1
TCTCGAG	50	1.0804797E-9	40.5	1
ACGGGTA	90	0.0	40.0	5
ACGGCTG	865	0.0	39.53757	8
TACGGCT	860	0.0	39.505814	7
TCGTGTA	75	0.0	39.000004	17