SRR2935577.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935577.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	611077
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGC	4161	0.6809289173050205	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCG	3935	0.6439450347501214	No Hit
GAATCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTC	3276	0.5361026515480046	No Hit
GCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTGC	1877	0.30716259980329813	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1356	0.22190329532939382	No Hit
CCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTGC	1351	0.2210850678392412	Illumina Single End Adapter 1 (95% over 21bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1238	0.20259312656179174	No Hit
CTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTGCT	948	0.15513593213293905	Illumina Single End Adapter 1 (95% over 22bp)
GAATGACTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCT	789	0.12911629794608537	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACTGATGCT	695	0.11373362113121586	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	655	0.10718780120999481	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCC	634	0.10375124575135376	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGCGAT	25	3.8886537E-5	45.0	31
ACCGGTA	20	7.0306903E-4	45.0	41
CGTATGA	20	7.0306903E-4	45.0	2
CGAAACA	20	7.0306903E-4	45.0	32
AATTGCG	45	3.8380676E-10	45.0	1
CTACGCG	20	7.0306903E-4	45.0	1
CGTGTAA	20	7.0306903E-4	45.0	20
CCGAATA	20	7.0306903E-4	45.0	13
TCATACG	25	3.8886537E-5	45.0	31
TAAGCCG	20	7.0306903E-4	45.0	38
GCGTATT	20	7.0306903E-4	45.0	10
GACTCGT	20	7.0306903E-4	45.0	38
ATCGAAG	25	3.8886537E-5	45.0	12
GCTACGA	195	0.0	42.692307	10
TACGAAT	200	0.0	41.625	12
TCGTGTA	55	6.002665E-11	40.909092	17
CTAGCGG	55	6.002665E-11	40.909092	2
TGACCGG	50	1.0804797E-9	40.5	2
CGGATCT	50	1.0804797E-9	40.5	29
CGAATAT	195	0.0	40.384617	14