##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935577.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 611077 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.135613024217896 33.0 31.0 34.0 30.0 34.0 2 32.14120151797564 33.0 31.0 34.0 30.0 34.0 3 32.15737951191094 33.0 31.0 34.0 30.0 34.0 4 35.82387489628967 37.0 35.0 37.0 35.0 37.0 5 35.8866967665286 37.0 35.0 37.0 35.0 37.0 6 35.819369735728884 37.0 35.0 37.0 35.0 37.0 7 36.07425741764131 37.0 35.0 37.0 35.0 37.0 8 35.842589395444435 37.0 35.0 37.0 35.0 37.0 9 37.669265902660385 39.0 38.0 39.0 35.0 39.0 10 37.35535947188325 39.0 37.0 39.0 34.0 39.0 11 37.345704387499445 39.0 37.0 39.0 34.0 39.0 12 37.22172164882658 39.0 37.0 39.0 34.0 39.0 13 37.12803623765908 39.0 37.0 39.0 33.0 39.0 14 38.278940297212955 40.0 37.0 41.0 33.0 41.0 15 38.388857705330096 40.0 38.0 41.0 34.0 41.0 16 38.20571220975425 40.0 37.0 41.0 34.0 41.0 17 38.240555609194914 40.0 37.0 41.0 34.0 41.0 18 38.176817324167004 40.0 37.0 41.0 34.0 41.0 19 38.05049281841732 40.0 37.0 41.0 34.0 41.0 20 38.161388826612686 40.0 37.0 41.0 34.0 41.0 21 38.10478875820887 40.0 37.0 41.0 34.0 41.0 22 38.19453031287383 40.0 37.0 41.0 34.0 41.0 23 38.231564925533114 40.0 37.0 41.0 34.0 41.0 24 38.149830545086786 40.0 37.0 41.0 34.0 41.0 25 37.91932113301597 40.0 36.0 41.0 34.0 41.0 26 37.97509479165473 40.0 36.0 41.0 34.0 41.0 27 37.996208333810635 40.0 36.0 41.0 34.0 41.0 28 37.88338294519349 40.0 36.0 41.0 34.0 41.0 29 37.859181412489754 40.0 36.0 41.0 34.0 41.0 30 37.73754535025864 40.0 36.0 41.0 33.0 41.0 31 37.72259633401355 40.0 36.0 41.0 33.0 41.0 32 37.67427345490012 40.0 36.0 41.0 33.0 41.0 33 37.618666714669345 40.0 36.0 41.0 33.0 41.0 34 37.53840023434035 40.0 36.0 41.0 33.0 41.0 35 37.490823578697935 40.0 36.0 41.0 33.0 41.0 36 37.39279501601271 40.0 35.0 41.0 33.0 41.0 37 37.39229917015368 40.0 35.0 41.0 33.0 41.0 38 37.24900298980325 40.0 35.0 41.0 33.0 41.0 39 37.19497870153843 40.0 35.0 41.0 32.0 41.0 40 37.0733442757623 40.0 35.0 41.0 32.0 41.0 41 36.932258946090265 39.0 35.0 41.0 32.0 41.0 42 36.95790383208663 39.0 35.0 41.0 32.0 41.0 43 36.91261821341664 39.0 35.0 41.0 32.0 41.0 44 36.815370239757016 39.0 35.0 41.0 32.0 41.0 45 36.799277341480696 39.0 35.0 41.0 31.0 41.0 46 36.65418269710691 39.0 35.0 41.0 31.0 41.0 47 36.581738471583776 39.0 35.0 41.0 31.0 41.0 48 36.51085051474691 39.0 35.0 41.0 31.0 41.0 49 36.457232067317214 39.0 35.0 41.0 31.0 41.0 50 36.33660733426393 39.0 35.0 41.0 31.0 41.0 51 35.196446601655765 37.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 2.0 9 13.0 10 13.0 11 13.0 12 8.0 13 16.0 14 19.0 15 34.0 16 46.0 17 74.0 18 129.0 19 280.0 20 445.0 21 816.0 22 1346.0 23 1773.0 24 2428.0 25 3308.0 26 4443.0 27 4897.0 28 5688.0 29 6395.0 30 7934.0 31 10221.0 32 13561.0 33 19227.0 34 36654.0 35 51987.0 36 41203.0 37 62510.0 38 114641.0 39 220805.0 40 146.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.054186297307865 20.145579035047955 23.49262040626631 12.307614261377863 2 30.97874735917078 27.2788862941986 24.161439556717074 17.580926789913544 3 31.475247800195394 25.846497249937407 26.001796827568374 16.676458122298826 4 28.799152970902192 24.768727999908357 27.37363703755828 19.05848199163117 5 27.251884787023567 28.560885125769747 24.387597634995263 19.799632452211423 6 25.622466563133617 35.288351549804695 24.15702112827025 14.932160758791447 7 77.21498272721769 6.22965681902608 11.47400409441036 5.081356359345876 8 77.10124910608647 8.487310109855223 9.107362901892888 5.304077882165423 9 70.72856612178171 8.745051769253303 11.103019750375157 9.423362358589834 10 41.081074889089265 25.678596968958082 18.44628418349897 14.794043958453681 11 32.094973301237 25.48631350877222 23.822857021291917 18.59585616869887 12 29.8150642226757 22.1116160483867 28.211665632972604 19.861654095964994 13 24.790656496644452 25.313340217353954 29.623926280976047 20.272077005025555 14 19.731392279532695 29.338364886912778 27.683090674334004 23.247152159220523 15 18.85932542052802 25.452275245181866 35.122251369303704 20.56614796498641 16 20.915531103281584 25.28764787416316 31.39097036870967 22.405850653845587 17 20.90227581794111 25.48811360925055 28.924178131397515 24.68543244141082 18 21.93749723848222 25.981832076808654 29.40153204915256 22.679138635556566 19 24.262899765496 27.59455845989949 26.20504453612229 21.93749723848222 20 27.3957291797924 25.383216845012985 27.6793268278793 19.541727147315314 21 24.735835254804222 28.31558052422199 26.717909526949956 20.230674694023833 22 22.05499470606814 25.613956997236027 27.65068886572396 24.680359430971873 23 22.236641208882023 27.58490337551569 27.76900456080003 22.40945085480226 24 22.800072658601124 24.152766345321456 29.29548976642878 23.751671229648636 25 21.74144993184165 28.100877630805936 26.72903742081603 23.42863501653638 26 20.674317639184586 28.1574989731245 27.52910026068728 23.639083127003634 27 22.38523132109374 27.655434585166844 27.4016204177215 22.557713676017915 28 19.412610849369226 27.804842924868716 30.195212714600615 22.587333511161443 29 21.892167435527764 26.76160287492411 28.388566416343604 22.957663273204524 30 21.631480157165136 27.449732194142474 27.83659015148664 23.082197497205755 31 23.095943719040317 27.39834750776089 26.19669861572273 23.309010157476063 32 25.748146305621063 27.934450159308895 25.55258993547458 20.76481359959547 33 23.253207042647652 27.377891820507074 25.681215296926574 23.6876858399187 34 21.196837714396057 27.726293085814063 28.17615455989998 22.900714639889898 35 22.704340042253268 25.734400083786497 26.4763687718569 25.084891102103335 36 21.25967758563978 29.250650899968416 26.438893952807913 23.050777561583892 37 23.070578666845588 27.220464851401704 27.948032735645427 21.760923746107284 38 22.157273142337218 28.2196842623761 26.06201837084361 23.561024224443074 39 23.60668131839359 25.867116582689253 27.82709871260087 22.699103386316292 40 24.037887205704028 25.813604504833272 28.487081006157982 21.661427283304725 41 20.0750478253968 25.749946406099394 28.38709360686133 25.787912161642478 42 22.13387183611885 26.059072751879057 27.90204835069885 23.90500706130324 43 23.5048938186186 25.045125246081916 26.625940757056803 24.824040178242676 44 22.059576780012993 25.702816502666604 27.790933057536122 24.44667365978428 45 21.665845711751547 25.29795754053908 27.14993364175055 25.88626310595882 46 22.585697056181136 27.483115875740697 26.283267084180878 23.647919983897285 47 20.919622240732348 25.415291362626967 30.489610965557535 23.175475431083154 48 22.06415885395785 24.561389153903683 28.53993850202184 24.83451349011663 49 21.209274772246378 24.51949590640787 29.703294347520853 24.567934973824904 50 20.3822104252001 25.140530571433718 29.69003906218038 24.78721994118581 51 20.861855379927572 24.389561380971628 27.191335952752272 27.55724728634853 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 209.0 1 795.0 2 1381.0 3 2044.5 4 2708.0 5 1919.5 6 1131.0 7 1122.5 8 1114.0 9 1170.5 10 1227.0 11 1244.0 12 1261.0 13 1200.5 14 1140.0 15 1261.5 16 1383.0 17 1352.0 18 1321.0 19 1611.5 20 1902.0 21 2051.0 22 2200.0 23 2334.0 24 2468.0 25 3049.5 26 4554.5 27 5478.0 28 6850.5 29 8223.0 30 9143.5 31 10064.0 32 11501.5 33 12939.0 34 15583.5 35 18228.0 36 18376.0 37 18524.0 38 20329.0 39 22134.0 40 25104.0 41 28074.0 42 31090.0 43 34106.0 44 37177.0 45 40248.0 46 50632.0 47 61016.0 48 58409.0 49 55802.0 50 53906.0 51 52010.0 52 46163.5 53 40317.0 54 36878.5 55 33440.0 56 30560.5 57 27681.0 58 28128.0 59 28575.0 60 27610.5 61 26646.0 62 24192.5 63 21739.0 64 18630.0 65 15521.0 66 12870.0 67 10219.0 68 8284.0 69 6349.0 70 5409.0 71 4469.0 72 3677.0 73 2885.0 74 2191.0 75 1212.5 76 928.0 77 749.0 78 570.0 79 376.0 80 182.0 81 134.5 82 87.0 83 53.0 84 19.0 85 15.0 86 11.0 87 10.5 88 10.0 89 8.5 90 7.0 91 5.0 92 3.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 611077.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.108610106265463 #Duplication Level Percentage of deduplicated Percentage of total 1 73.29892939618367 19.870320982078233 2 10.252295918368908 5.5585098549023915 3 3.5710258678043116 2.904166437890861 4 1.7061501819764728 1.8500544026373629 5 1.0912342092008076 1.479092135592181 6 0.7295151418711506 1.1865684928561173 7 0.5921796745937289 1.1237217537991586 8 0.5090941958957229 1.1040668851119906 9 0.4347015150775843 1.0605738496357 >10 7.2112595601248985 48.38578792283151 >50 0.5345259507151017 8.734732640965348 >100 0.058785733808803704 2.848107379836652 >500 0.006060384928742649 1.069518864947889 >1k 0.004242269450119855 2.8247783969145934 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGC 4161 0.6809289173050205 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCG 3935 0.6439450347501214 No Hit GAATCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTC 3276 0.5361026515480046 No Hit GCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTGC 1877 0.30716259980329813 Illumina Single End Adapter 1 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1356 0.22190329532939382 No Hit CCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTGC 1351 0.2210850678392412 Illumina Single End Adapter 1 (95% over 21bp) GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 1238 0.20259312656179174 No Hit CTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTGCT 948 0.15513593213293905 Illumina Single End Adapter 1 (95% over 22bp) GAATGACTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCT 789 0.12911629794608537 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACTGATGCT 695 0.11373362113121586 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 655 0.10718780120999481 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCC 634 0.10375124575135376 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 8.182274901526322E-4 0.0 0.0 0.16020894257188537 0.0 2 8.182274901526322E-4 0.0 0.0 0.882540170878629 0.0 3 8.182274901526322E-4 0.0 0.0 1.2096675214416515 0.0 4 8.182274901526322E-4 0.0 0.0 1.6850576932203307 0.0 5 8.182274901526322E-4 0.0 0.0 3.1899416931090516 0.0 6 8.182274901526322E-4 0.0 0.0 3.857124388579508 0.0 7 8.182274901526322E-4 0.0 0.0 4.5979475581637015 0.0 8 8.182274901526322E-4 0.0 0.0 5.584893556785806 0.0 9 8.182274901526322E-4 0.0 0.0 5.958823519785559 0.0 10 8.182274901526322E-4 0.0 0.0 7.352428581013522 0.0 11 8.182274901526322E-4 0.0 0.0 8.451635391284569 0.0 12 8.182274901526322E-4 0.0 0.0 9.947846179777672 0.0 13 8.182274901526322E-4 0.0 0.0 10.371524374178705 0.0 14 8.182274901526322E-4 0.0 0.0 10.561516797392146 0.0 15 8.182274901526322E-4 0.0 0.0 10.92988281345886 0.0 16 8.182274901526322E-4 0.0 0.0 11.53275282820332 0.0 17 8.182274901526322E-4 0.0 0.0 12.190771375784067 0.0 18 8.182274901526322E-4 0.0 0.0 12.945504412700855 0.0 19 8.182274901526322E-4 0.0 0.0 13.479970609268554 0.0 20 9.818729881831585E-4 0.0 0.0 13.939978104232363 0.0 21 9.818729881831585E-4 0.0 0.0 14.518628585268305 0.0 22 9.818729881831585E-4 0.0 0.0 15.119862145032458 0.0 23 9.818729881831585E-4 0.0 0.0 15.693275970131424 0.0 24 9.818729881831585E-4 0.0 0.0 16.166375104937675 0.0 25 9.818729881831585E-4 0.0 0.0 16.58367112491552 0.0 26 9.818729881831585E-4 0.0 0.0 16.959728479389668 0.0 27 9.818729881831585E-4 0.0 0.0 17.351495801674748 0.0 28 9.818729881831585E-4 0.0 0.0 17.747517906908623 0.0 29 9.818729881831585E-4 0.0 0.0 18.161213725929795 0.0 30 9.818729881831585E-4 0.0 0.0 18.64560440010015 0.0 31 9.818729881831585E-4 0.0 0.0 19.078119451394834 0.0 32 9.818729881831585E-4 0.0 0.0 19.51636209512058 0.0 33 9.818729881831585E-4 0.0 0.0 19.92891239565554 0.0 34 9.818729881831585E-4 0.0 0.0 20.33622604025352 0.0 35 9.818729881831585E-4 0.0 0.0 20.773977747485176 0.0 36 9.818729881831585E-4 0.0 0.0 21.201419788340914 0.0 37 0.001145518486213685 0.0 0.0 21.633280257643474 0.0 38 0.001145518486213685 0.0 0.0 22.03617547379463 0.0 39 0.001145518486213685 0.0 0.0 22.477200090986898 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGCGAT 25 3.8886537E-5 45.0 31 ACCGGTA 20 7.0306903E-4 45.0 41 CGTATGA 20 7.0306903E-4 45.0 2 CGAAACA 20 7.0306903E-4 45.0 32 AATTGCG 45 3.8380676E-10 45.0 1 CTACGCG 20 7.0306903E-4 45.0 1 CGTGTAA 20 7.0306903E-4 45.0 20 CCGAATA 20 7.0306903E-4 45.0 13 TCATACG 25 3.8886537E-5 45.0 31 TAAGCCG 20 7.0306903E-4 45.0 38 GCGTATT 20 7.0306903E-4 45.0 10 GACTCGT 20 7.0306903E-4 45.0 38 ATCGAAG 25 3.8886537E-5 45.0 12 GCTACGA 195 0.0 42.692307 10 TACGAAT 200 0.0 41.625 12 TCGTGTA 55 6.002665E-11 40.909092 17 CTAGCGG 55 6.002665E-11 40.909092 2 TGACCGG 50 1.0804797E-9 40.5 2 CGGATCT 50 1.0804797E-9 40.5 29 CGAATAT 195 0.0 40.384617 14 >>END_MODULE