SRR2935576.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935576.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	498321
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGC	6104	1.224913258722791	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCG	5629	1.129593173877882	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCTTC	4535	0.9100559679403437	No Hit
GCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCTTCTGC	2105	0.4224184812600713	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1399	0.28074273410111156	No Hit
CCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCTTCTGC	1367	0.27432117049050714	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTTCGCAGT	1218	0.24442076492863035	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCT	1164	0.23358437633573542	No Hit
CTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCTTCTGCT	987	0.19806510261457977	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTA	910	0.1826132151765629	No Hit
GAACTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCTTCT	900	0.18060647654824902	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTC	889	0.17839906405710373	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCC	784	0.15732830845980803	No Hit
TCTGTCTCTTATACACATCTGACGCTTTCGCAGTCGTATGCCGTCTTCTGC	608	0.12200970860148379	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCGTT	20	7.0294365E-4	45.0	21
ACTGCGC	20	7.0294365E-4	45.0	27
GTCGATC	25	3.8876147E-5	45.0	20
GATCGGC	20	7.0294365E-4	45.0	19
GATCACG	20	7.0294365E-4	45.0	1
TACGGAC	20	7.0294365E-4	45.0	33
ACGGGTA	50	2.1827873E-11	45.0	5
TCTAGCG	20	7.0294365E-4	45.0	1
CGTTACC	20	7.0294365E-4	45.0	24
ACGGCTA	20	7.0294365E-4	45.0	30
AGGTTCG	25	3.8876147E-5	45.0	1
CATAGCG	20	7.0294365E-4	45.0	1
CACTAGA	20	7.0294365E-4	45.0	30
CTTGACG	25	3.8876147E-5	45.0	1
AAACACG	25	3.8876147E-5	45.0	40
CTACCGG	20	7.0294365E-4	45.0	2
CTCGCAC	20	7.0294365E-4	45.0	20
GCGGCTA	40	6.8012014E-9	45.0	24
TTACGAA	20	7.0294365E-4	45.0	1
CCGAACT	20	7.0294365E-4	45.0	12