SRR2935571.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935571.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	608390
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1529	0.2513190552112954	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	1416	0.23274544289025134	No Hit
GCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGC	1301	0.21384309406794985	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGC	1265	0.20792583704531634	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCG	1165	0.19148901198244547	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTC	1137	0.18688670096484164	No Hit
CCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGC	903	0.14842453031772382	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	710	0.11670145794638308	No Hit
CTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGCT	695	0.11423593418695245	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	628	0.10322326139482897	No Hit
GCACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCA	624	0.10256578839231414	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGGCGTA	30	2.1638098E-6	45.000004	7
ACTACGG	45	3.8380676E-10	45.000004	2
GCGCGTA	20	7.0306653E-4	45.0	22
CGTTGAT	25	3.8886334E-5	45.0	25
ACGTGCG	25	3.8886334E-5	45.0	1
CGAATCG	20	7.0306653E-4	45.0	32
GCGATAC	20	7.0306653E-4	45.0	9
TCGACGG	20	7.0306653E-4	45.0	2
AATCGTC	20	7.0306653E-4	45.0	34
CTTACCG	20	7.0306653E-4	45.0	10
TCGTGTA	155	0.0	43.548386	17
TATGGGT	70	0.0	41.785713	4
CGTAAGG	70	0.0	41.785713	2
CGTATGG	65	0.0	41.53846	2
CCTCGTG	170	0.0	41.02941	15
CGGGTAC	55	6.002665E-11	40.909092	6
TTCGAAT	55	6.002665E-11	40.909092	9
TAGGGCG	140	0.0	40.17857	5
AGTACGG	85	0.0	39.705883	2
ACGTATG	40	3.454643E-7	39.375	1