SRR2935567.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935567.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	260640
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTCTGC	1524	0.5847145488029466	Illumina PCR Primer Index 10 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTCTGC	1045	0.4009361571516268	Illumina PCR Primer Index 10 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTCTGCT	771	0.2958103130755064	Illumina PCR Primer Index 10 (95% over 24bp)
GAATGATACCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCG	655	0.25130448127685695	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGC	640	0.24554941682013504	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTC	586	0.22483118477593617	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	547	0.2098680171884592	No Hit
TCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTCTGC	509	0.19528852056476367	Illumina PCR Primer Index 10 (95% over 23bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCC	391	0.15001534683855125	No Hit
ACTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTCTGC	344	0.1319828115408226	Illumina PCR Primer Index 10 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGCG	25	3.8824783E-5	45.0	28
AGCCGTA	20	7.02324E-4	45.0	44
CAGCGAT	20	7.02324E-4	45.0	21
ATCTCTC	20	7.02324E-4	45.0	26
CTCACTC	20	7.02324E-4	45.0	28
GGTGTCG	20	7.02324E-4	45.0	31
TGGACGG	35	1.2070996E-7	45.0	2
GCGCGAG	25	3.8824783E-5	45.0	1
TATATCC	25	3.8824783E-5	45.0	15
GTCTACC	20	7.02324E-4	45.0	23
CGCGAGG	35	1.2070996E-7	45.0	2
TCGATGA	20	7.02324E-4	45.0	37
ACGGGCC	20	7.02324E-4	45.0	5
ATGTATG	25	3.8824783E-5	45.0	1
AACGGGC	45	3.8198777E-10	45.0	4
TACGCGG	25	3.8824783E-5	45.0	2
TAACCCA	20	7.02324E-4	45.0	21
AGGCCCA	20	7.02324E-4	45.0	44
CTACGAA	25	3.8824783E-5	45.0	28
TACGAAC	20	7.02324E-4	45.0	29