SRR2935566.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935566.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	669838
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3736	0.5577467984796324	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTC	1766	0.26364583675455855	No Hit
GCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGC	1386	0.20691570200555956	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCG	1374	0.20512422406611747	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGC	1311	0.1957189648840466	No Hit
CCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGC	1258	0.1878066039848441	No Hit
CTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGCT	814	0.12152192022548734	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCC	743	0.11092234241712176	No Hit
CGCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTG	727	0.10853370516453233	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTACGC	20	7.031177E-4	45.0	9
GAGTACG	20	7.031177E-4	45.0	1
ATTACGG	25	3.889056E-5	45.0	2
ACGTCGC	20	7.031177E-4	45.0	20
ATCGAGC	20	7.031177E-4	45.0	37
GTACGCT	20	7.031177E-4	45.0	10
ATAGACG	30	2.1641408E-6	44.999996	1
CTAACGG	55	6.002665E-11	40.90909	2
GCGATAC	55	6.002665E-11	40.90909	9
CGCACGG	55	6.002665E-11	40.90909	2
CGTTTTT	2085	0.0	40.791363	1
AACACGT	195	0.0	40.384617	41
CACGACC	200	0.0	39.375	27
ACGATAG	35	6.244387E-6	38.571426	1
TACGCGG	35	6.244387E-6	38.571426	2
CGAGACA	205	0.0	38.41463	22
CGGGCAC	90	0.0	37.500004	6
GCGAGAC	210	0.0	37.5	21
GCTGCGA	60	1.546141E-10	37.499996	28
TCGATAG	30	1.13941336E-4	37.499996	1