SRR2935565.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935565.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	558066
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	1785	0.31985464084893184	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1263	0.22631731730655513	No Hit
CCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	1196	0.21431156888253358	No Hit
CTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGCT	1037	0.18582031515985564	Illumina Single End Adapter 1 (95% over 21bp)
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	942	0.16879723903624302	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCC	663	0.11880315231531755	No Hit
TCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	657	0.11772801066540517	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTC	618	0.11073958994097471	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	584	0.10464712059147126	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGC	564	0.10106331509176333	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGGAC	20	7.030163E-4	45.0	18
CGTATGA	20	7.030163E-4	45.0	40
CGCATAT	20	7.030163E-4	45.0	17
ATTACGG	25	3.8882175E-5	45.0	2
CACGATT	25	3.8882175E-5	45.0	27
TCGATTG	20	7.030163E-4	45.0	1
ACGATTG	25	3.8882175E-5	45.0	1
TGGCACG	25	3.8882175E-5	45.0	1
CATAGCG	20	7.030163E-4	45.0	1
CTCGCTA	20	7.030163E-4	45.0	44
ACTCGAC	20	7.030163E-4	45.0	41
TCGTAAG	20	7.030163E-4	45.0	12
TTCGGAC	25	3.8882175E-5	45.0	13
TTACCGG	20	7.030163E-4	45.0	2
TCGACCA	20	7.030163E-4	45.0	43
GATTACG	20	7.030163E-4	45.0	1
GCGTAAG	25	3.8882175E-5	45.0	1
TTAACGG	30	2.1634878E-6	44.999996	2
TTACGGG	90	0.0	42.5	3
ATACGAA	60	3.6379788E-12	41.249996	19