##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935565.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 558066 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.054638698648546 33.0 31.0 34.0 30.0 34.0 2 32.03795070833916 33.0 31.0 34.0 30.0 34.0 3 32.05297581289668 33.0 31.0 34.0 30.0 34.0 4 35.72019617751305 37.0 35.0 37.0 33.0 37.0 5 35.8085961158716 37.0 35.0 37.0 35.0 37.0 6 35.752101005974204 37.0 35.0 37.0 35.0 37.0 7 36.021140868642775 37.0 35.0 37.0 35.0 37.0 8 35.865791859744185 37.0 35.0 37.0 35.0 37.0 9 37.66735475732261 39.0 38.0 39.0 35.0 39.0 10 37.276874061490936 39.0 37.0 39.0 34.0 39.0 11 37.251672741216986 39.0 37.0 39.0 34.0 39.0 12 37.00926772102225 39.0 35.0 39.0 33.0 39.0 13 36.84688011812223 39.0 35.0 39.0 33.0 39.0 14 37.62858514942677 40.0 36.0 41.0 33.0 41.0 15 37.866325846763644 40.0 36.0 41.0 33.0 41.0 16 37.748631882250486 40.0 36.0 41.0 33.0 41.0 17 37.848037687298635 40.0 36.0 41.0 33.0 41.0 18 37.8043260116187 39.0 36.0 41.0 33.0 41.0 19 37.69654664502048 39.0 36.0 41.0 33.0 41.0 20 37.81394673748267 40.0 36.0 41.0 33.0 41.0 21 37.72235542032663 40.0 35.0 41.0 33.0 41.0 22 37.871117394716755 40.0 35.0 41.0 34.0 41.0 23 37.93998738500464 40.0 35.0 41.0 34.0 41.0 24 37.88670694864048 40.0 35.0 41.0 34.0 41.0 25 37.57146287356692 39.0 35.0 41.0 33.0 41.0 26 37.698426351005075 40.0 35.0 41.0 33.0 41.0 27 37.69764328950339 40.0 35.0 41.0 34.0 41.0 28 37.49501313464716 40.0 35.0 41.0 33.0 41.0 29 37.39486906566607 40.0 35.0 41.0 33.0 41.0 30 37.2447721237273 39.0 35.0 41.0 33.0 41.0 31 37.19853207326732 39.0 35.0 41.0 32.0 41.0 32 37.22043987628703 39.0 35.0 41.0 33.0 41.0 33 37.17472664523551 39.0 35.0 41.0 33.0 41.0 34 37.065864969376385 39.0 35.0 41.0 32.0 41.0 35 36.96585350119878 39.0 35.0 41.0 32.0 41.0 36 36.83826106589543 39.0 35.0 41.0 31.0 41.0 37 36.80009353732354 39.0 35.0 41.0 31.0 41.0 38 36.6527758365498 39.0 35.0 41.0 31.0 41.0 39 36.58760433353761 39.0 35.0 41.0 31.0 41.0 40 36.47225417782126 39.0 35.0 41.0 31.0 41.0 41 36.24371848491039 39.0 35.0 41.0 30.0 41.0 42 36.295741005544144 39.0 35.0 41.0 30.0 41.0 43 36.20175570631431 39.0 35.0 41.0 30.0 41.0 44 36.10257388910989 38.0 35.0 41.0 30.0 41.0 45 36.12685596327316 38.0 35.0 41.0 30.0 41.0 46 36.00785390975261 38.0 35.0 40.0 30.0 41.0 47 35.96029143506323 38.0 35.0 40.0 30.0 41.0 48 35.843943189515215 38.0 35.0 40.0 30.0 41.0 49 35.750882512104305 38.0 35.0 40.0 29.0 41.0 50 35.595072984199 37.0 35.0 40.0 29.0 41.0 51 34.41741299416198 36.0 33.0 40.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 11.0 9 19.0 10 14.0 11 16.0 12 7.0 13 14.0 14 21.0 15 37.0 16 55.0 17 93.0 18 164.0 19 338.0 20 585.0 21 990.0 22 1369.0 23 2054.0 24 2889.0 25 3835.0 26 4726.0 27 5459.0 28 6253.0 29 7313.0 30 9024.0 31 11468.0 32 15156.0 33 22549.0 34 42847.0 35 47882.0 36 39017.0 37 58840.0 38 102481.0 39 172418.0 40 122.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.786935595431366 20.22000981962707 23.849150458906294 12.143904126035272 2 32.16770059455333 24.002178953743822 25.40774747072927 18.422372980973574 3 31.57959811205126 23.80381531933499 26.977991850426292 17.638594718187456 4 28.314034540717408 25.443943906276317 26.282912773757943 19.959108779248332 5 25.17193306884849 28.814154598201647 25.875613278716138 20.13829905423373 6 25.510602688570888 33.7374074034254 25.494833944372168 15.257155963631542 7 79.48450541692202 6.232416954267058 9.345310411313356 4.937767217497572 8 80.48062415556583 5.50956338497597 8.865438854902468 5.144373604555733 9 75.07642465228128 6.992542100755108 11.230571294434709 6.7004619525289115 10 43.04275838341701 23.328781900348705 18.586332082585212 15.042127633649066 11 33.694939308253865 24.606229370719593 23.457619708063206 18.24121161296334 12 30.601756781455958 20.62713012439389 29.897718191038336 18.873394903111816 13 28.464733561980125 23.211591460508256 30.139266681718652 18.18440829579297 14 20.927273834994427 27.134424960488545 32.717635548483514 19.220665656033518 15 19.898721656578257 23.6049141141012 37.2773112857619 19.219052943558648 16 25.426562449602734 23.989456444219858 30.376514605799315 20.20746650037809 17 25.975422261883 22.39125838162511 27.003795250024194 24.62952410646769 18 27.664469793895346 21.921421480613404 30.117405468170432 20.296703257320818 19 27.88845763762709 24.4257847638093 26.632871380804424 21.05288621775919 20 24.974644576089567 27.39066705371766 26.88051234083424 20.754176029358533 21 24.671275440539294 25.80967125752151 30.504994032963843 19.014059268975352 22 21.76015023312655 24.55963989922339 30.54782050868535 23.132389358964712 23 21.777710880075116 25.10240724215415 29.957209362333487 23.16267251543724 24 22.00761200288138 25.696602194005724 28.661305293639106 23.63448050947379 25 23.81152050115936 25.009228299161745 27.170263015485624 24.008988184193267 26 21.101267592005247 24.83666806435081 27.402135231316727 26.659929112327212 27 21.88146204929166 24.06184931531396 29.713331398078363 24.343357237316017 28 20.082391688438285 24.975540527464492 30.03300684865231 24.909060935444913 29 22.174079768342814 26.196722251489966 29.263205427315047 22.36599255285217 30 24.74689373658313 23.225209921407146 28.89658212469493 23.131314217314795 31 24.043751097540433 25.470643257249144 29.209806725369404 21.275798919841023 32 26.392039651224046 23.531266911082202 28.177491551178534 21.899201886515215 33 24.623790017668163 23.477689018861568 28.10026054265983 23.79826042081044 34 21.964964717434857 23.66494285622131 31.724025473689494 22.646066952654344 35 22.501818781291103 25.555937828142188 29.01413094508535 22.928112445481357 36 25.272817193665265 24.367906304989013 28.54536918572355 21.813907315622167 37 21.8993810767902 26.265352126809372 29.475187522622768 22.360079273777654 38 23.153354621138 26.143323549544316 27.769654485311772 22.933667344005908 39 22.903563377808357 22.850702246687668 28.279809198195196 25.96592517730878 40 25.5742152361907 22.26564599886035 29.665487594657264 22.494651170291686 41 21.62342805331269 22.43444323789659 28.830102532675344 27.11202617611537 42 22.75841925507019 22.94441876050503 30.86785433980927 23.42930764461551 43 22.067999125551456 22.427454817172162 30.743317098694416 24.76122895858196 44 21.754057763777045 22.885106779484865 29.676239011156387 25.684596445581704 45 21.220787505420503 22.86073690208685 27.932896825823466 27.985578766669178 46 22.773650428443947 23.47338845226192 28.648761974390126 25.104199144904012 47 20.702927610712713 23.707948522217805 31.467424999910403 24.12169886715908 48 21.74904043607745 24.454634398081947 29.216795146093833 24.579530019746766 49 23.422498414166064 22.08143839617536 31.62009511419796 22.87596807546061 50 21.61339339791351 22.862528804836703 30.466826504391953 25.057251292857835 51 21.4085789136052 23.319822386599434 27.80961391663352 27.461984783161846 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 253.0 1 701.0 2 1149.0 3 1754.5 4 2360.0 5 1625.0 6 890.0 7 928.0 8 966.0 9 1020.5 10 1075.0 11 1161.5 12 1248.0 13 1236.5 14 1225.0 15 1278.0 16 1331.0 17 1344.0 18 1357.0 19 1336.0 20 1315.0 21 1535.5 22 1756.0 23 1872.5 24 1989.0 25 2299.0 26 3392.0 27 4175.0 28 4807.5 29 5440.0 30 6763.5 31 8087.0 32 8598.5 33 9110.0 34 11148.5 35 13187.0 36 13815.5 37 14444.0 38 16888.5 39 19333.0 40 21046.0 41 22759.0 42 25890.0 43 29021.0 44 32125.5 45 35230.0 46 40631.0 47 46032.0 48 50762.5 49 55493.0 50 54315.0 51 53137.0 52 47153.0 53 41169.0 54 38083.5 55 34998.0 56 33617.5 57 32237.0 58 31002.0 59 29767.0 60 26276.5 61 22786.0 62 20803.5 63 18821.0 64 16431.5 65 14042.0 66 11813.0 67 9584.0 68 8102.0 69 6620.0 70 5488.5 71 4357.0 72 3961.5 73 3566.0 74 2878.5 75 1844.0 76 1497.0 77 1161.0 78 825.0 79 571.0 80 317.0 81 263.5 82 210.0 83 131.5 84 53.0 85 35.0 86 17.0 87 21.5 88 26.0 89 16.0 90 6.0 91 5.0 92 4.0 93 3.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 558066.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.130544601810474 #Duplication Level Percentage of deduplicated Percentage of total 1 73.91391536745495 23.009804390410007 2 10.303656719382284 6.415168901289488 3 3.73443458780477 3.4876494749460027 4 1.867067966288757 2.324913703966549 5 1.1331893075294892 1.7638400140170745 6 0.8201577103352033 1.5319173709265281 7 0.6298034779452296 1.372428768238453 8 0.5074245537549381 1.26371221621775 9 0.42839163447602036 1.2002458395688416 >10 6.279899848559822 47.09170999331967 >50 0.3242587014355523 6.147836993614614 >100 0.051442111279436945 2.624710926503828 >500 0.004046008752315266 0.8158250045086965 >1k 0.0023120050013230088 0.9502364024725247 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC 1785 0.31985464084893184 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1263 0.22631731730655513 No Hit CCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC 1196 0.21431156888253358 No Hit CTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGCT 1037 0.18582031515985564 Illumina Single End Adapter 1 (95% over 21bp) GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 942 0.16879723903624302 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCC 663 0.11880315231531755 No Hit TCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC 657 0.11772801066540517 No Hit GAATCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTC 618 0.11073958994097471 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA 584 0.10464712059147126 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGC 564 0.10106331509176333 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.37570824956188E-4 0.0 0.0 0.19334630670924227 0.0 2 5.37570824956188E-4 0.0 0.0 0.9622517766715765 0.0 3 5.37570824956188E-4 0.0 0.0 1.3380137833159518 0.0 4 7.16761099941584E-4 0.0 0.0 1.797816028928478 0.0 5 7.16761099941584E-4 0.0 0.0 3.016847469654127 0.0 6 7.16761099941584E-4 0.0 0.0 3.7793020897169867 0.0 7 7.16761099941584E-4 0.0 0.0 4.466675984560966 0.0 8 7.16761099941584E-4 0.0 0.0 5.5366211164987655 0.0 9 7.16761099941584E-4 0.0 0.0 5.968290488938584 0.0 10 7.16761099941584E-4 0.0 0.0 6.938426637709518 0.0 11 7.16761099941584E-4 0.0 0.0 8.236122609153757 0.0 12 7.16761099941584E-4 0.0 0.0 9.329900047664614 0.0 13 8.9595137492698E-4 0.0 0.0 9.868366823995729 0.0 14 8.9595137492698E-4 0.0 0.0 10.119412399250267 0.0 15 8.9595137492698E-4 0.0 0.0 10.436220805424448 0.0 16 8.9595137492698E-4 0.0 0.0 11.10943866854458 0.0 17 8.9595137492698E-4 0.0 0.0 11.827454100411062 0.0 18 8.9595137492698E-4 0.0 0.0 12.820884984930098 0.0 19 8.9595137492698E-4 0.0 0.0 13.320646661864368 0.0 20 8.9595137492698E-4 0.0 0.0 13.925951410765036 0.0 21 8.9595137492698E-4 0.0 0.0 14.554909275963775 0.0 22 8.9595137492698E-4 0.0 0.0 15.229560661283791 0.0 23 8.9595137492698E-4 0.0 0.0 15.819096665985743 0.0 24 8.9595137492698E-4 0.0 0.0 16.314020205495407 0.0 25 8.9595137492698E-4 0.0 0.0 16.76665484010852 0.0 26 8.9595137492698E-4 0.0 0.0 17.22197732884641 0.0 27 8.9595137492698E-4 0.0 0.0 17.79556539907466 0.0 28 0.001075141649912376 0.0 0.0 18.266119061186313 0.0 29 0.001075141649912376 0.0 0.0 18.785233287819004 0.0 30 0.001075141649912376 0.0 0.0 19.407023542018326 0.0 31 0.0025086638497955438 0.0 0.0 19.85679113223167 0.0 32 0.00268785412478094 0.0 0.0 20.308888196019826 0.0 33 0.00268785412478094 0.0 0.0 20.81456315202861 0.0 34 0.00268785412478094 0.0 0.0 21.34442879516043 0.0 35 0.00268785412478094 0.0 0.0 21.86515573426799 0.0 36 0.00268785412478094 0.0 0.0 22.299333770557606 0.0 37 0.00268785412478094 0.0 0.0 22.792823787867384 0.0 38 0.00268785412478094 0.0 0.0 23.349747162521997 0.0 39 0.00268785412478094 0.0 0.0 24.298559668569666 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCCGGAC 20 7.030163E-4 45.0 18 CGTATGA 20 7.030163E-4 45.0 40 CGCATAT 20 7.030163E-4 45.0 17 ATTACGG 25 3.8882175E-5 45.0 2 CACGATT 25 3.8882175E-5 45.0 27 TCGATTG 20 7.030163E-4 45.0 1 ACGATTG 25 3.8882175E-5 45.0 1 TGGCACG 25 3.8882175E-5 45.0 1 CATAGCG 20 7.030163E-4 45.0 1 CTCGCTA 20 7.030163E-4 45.0 44 ACTCGAC 20 7.030163E-4 45.0 41 TCGTAAG 20 7.030163E-4 45.0 12 TTCGGAC 25 3.8882175E-5 45.0 13 TTACCGG 20 7.030163E-4 45.0 2 TCGACCA 20 7.030163E-4 45.0 43 GATTACG 20 7.030163E-4 45.0 1 GCGTAAG 25 3.8882175E-5 45.0 1 TTAACGG 30 2.1634878E-6 44.999996 2 TTACGGG 90 0.0 42.5 3 ATACGAA 60 3.6379788E-12 41.249996 19 >>END_MODULE