SRR2935562.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935562.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	950659
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9434	0.9923642441716747	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTT	2330	0.2450931406529576	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTC	2018	0.21227380164706797	No Hit
CCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC	1660	0.1746157139415921	No Hit
GCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC	1491	0.15683857198006856	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCT	1418	0.1491596881742034	No Hit
CGCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTG	1380	0.1451624609875886	No Hit
CTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGCT	1264	0.13296039904950147	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCC	1209	0.1271749386478222	No Hit
CGTCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCT	1095	0.11518325708797791	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGAAT	115	0.0	45.000004	12
CGTTACA	20	7.032671E-4	45.0	32
TAGTACG	45	3.8380676E-10	45.0	1
GCTACGA	120	0.0	44.999996	10
CTACGAA	120	0.0	43.124996	11
CGTTTTT	4325	0.0	42.71098	1
CTATGCG	70	0.0	41.785713	1
GCGTAAG	70	0.0	41.785713	1
CGAATAT	130	0.0	39.80769	14
AGTACGG	85	0.0	39.705883	2
ACGTTAG	40	3.4573895E-7	39.375	1
CGTAAGG	150	0.0	39.000004	2
TATAGCG	35	6.2471518E-6	38.571426	1
CATCGTT	30	1.1397735E-4	37.499996	36
CGTTTAG	30	1.1397735E-4	37.499996	30
TATCGCG	30	1.1397735E-4	37.499996	1
GACGGGA	285	0.0	37.105263	4
CGTTAGG	165	0.0	36.81818	2
TTCGTAG	25	0.0021069255	36.000004	1
TGACCGT	25	0.0021069255	36.000004	34