SRR2935561.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935561.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	503474
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTC	2105	0.41809507541600954	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGC	1834	0.36426905858097935	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCG	1740	0.34559877967879177	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1595	0.3167988813722258	No Hit
GCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTGC	1247	0.24767912543646742	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	781	0.155122210878814	No Hit
CCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTGC	630	0.12513059264232115	No Hit
CTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTGCT	535	0.10626169375181241	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACAG	20	7.029505E-4	45.0	13
GATCGGC	20	7.029505E-4	45.0	15
ATTACCG	20	7.029505E-4	45.0	1
TTCGTCA	20	7.029505E-4	45.0	45
TAGCCGT	25	3.8876722E-5	45.0	44
CCGTCGA	25	3.8876722E-5	45.0	41
CGGGCTT	20	7.029505E-4	45.0	6
TCCGTCG	20	7.029505E-4	45.0	40
TAATGCG	20	7.029505E-4	45.0	1
TATGGCC	110	0.0	40.909092	10
CGTTAGG	50	1.0786607E-9	40.5	2
CATACGA	100	0.0	40.5	18
CGTCGAA	50	1.0786607E-9	40.5	42
CGATGAA	390	0.0	40.384617	19
CGAATAT	135	0.0	40.0	14
GCTACGA	135	0.0	40.0	10
TCGATCA	85	0.0	39.705883	17
CCGATGA	405	0.0	39.444447	18
TACGGCT	275	0.0	39.272728	7
CCTATGC	115	0.0	39.130436	35