SRR2935560.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935560.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	407296
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTC	1670	0.41002121307353867	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1565	0.38424143620364554	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGC	1267	0.311075974230044	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCG	1179	0.2894700659962288	No Hit
GCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTGC	899	0.22072399434318038	No Hit
CCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTGC	618	0.15173240100565683	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	523	0.1284078409805154	No Hit
CGCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTG	428	0.10508328095537398	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	20	7.027915E-4	45.000004	1
CTCACGA	40	6.7957444E-9	45.000004	24
ACTTCGT	20	7.027915E-4	45.000004	30
CACGACG	35	1.2093369E-7	45.0	26
CGAATGG	75	0.0	42.0	2
CGATGAA	190	0.0	40.263157	19
TCACGAC	45	1.9230356E-8	40.0	25
TCTAGCG	40	3.4508957E-7	39.375004	1
TACGAAT	40	3.4508957E-7	39.375004	12
TACGGGT	35	6.2383588E-6	38.571426	4
TCTCGTA	35	6.2383588E-6	38.571426	28
ATGGGAC	165	0.0	38.181816	5
AACGAAT	65	9.094947E-12	38.07692	24
AAACGGG	95	0.0	37.894737	3
GTAGGGT	125	0.0	37.8	4
GTCGAGG	30	1.1386278E-4	37.500004	2
CGGCCTA	30	1.1386278E-4	37.500004	44
TAGCACG	30	1.1386278E-4	37.500004	1
TATACGG	30	1.1386278E-4	37.500004	2
AACACGT	30	1.1386278E-4	37.500004	41