SRR2935556.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935556.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	249038
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCGTCTTCTGC	1254	0.5035376127337996	No Hit
CCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCGTCTTCTGC	889	0.356973634545732	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	675	0.271042973361495	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCGTCTTC	646	0.25939816413559375	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGC	629	0.2525718966583413	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCG	612	0.24574562918108883	No Hit
CTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCGTCTTCTGCT	578	0.2320930942265839	No Hit
TCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCGTCTTCTGC	500	0.2007725728603667	No Hit
ACTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCGTCTTCTGC	358	0.14375316216802256	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	338	0.13572225925360787	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCC	275	0.11042491507320168	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAACGG	20	7.0226315E-4	45.000004	2
CGGGTAT	45	3.8198777E-10	45.000004	6
AGCAACG	30	2.158631E-6	45.000004	10
TATGCGG	20	7.0226315E-4	45.000004	2
ACTTACG	20	7.0226315E-4	45.000004	1
ACGGGTA	30	2.158631E-6	45.000004	5
AACGGGT	20	7.0226315E-4	45.000004	4
TTAAGCG	20	7.0226315E-4	45.000004	1
CGCTAGG	30	2.158631E-6	45.000004	2
CGGGCGG	20	7.0226315E-4	45.000004	6
ACGCTAG	20	7.0226315E-4	45.000004	1
TGAATAG	20	7.0226315E-4	45.000004	1
GACTCAT	20	7.0226315E-4	45.000004	9
TAGTACG	20	7.0226315E-4	45.000004	1
CTTACGG	30	2.158631E-6	45.000004	2
TACCAGG	25	3.881977E-5	45.0	2
CAACGAC	35	1.2068085E-7	45.0	12
GCGCGAG	55	1.8189894E-12	45.0	1
GCAACGA	35	1.2068085E-7	45.0	11
TATTGCG	25	3.881977E-5	45.0	1