SRR2935553.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935553.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	241320
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTGC	1191	0.4935355544505221	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTC	1036	0.42930548649096634	No Hit
CCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTGC	829	0.3435272666998177	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGC	773	0.32032156472733303	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCG	702	0.29090004972650424	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	579	0.23993038289408256	No Hit
CTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTGCT	546	0.22625559423172548	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTT	429	0.17777225261064147	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	329	0.1363334990883474	No Hit
TCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTGC	313	0.12970329852478038	No Hit
CGCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTG	253	0.10484004641140394	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGGGCG	25	3.8816186E-5	45.0	5
GAATGAC	25	3.8816186E-5	45.0	1
CGACCGT	20	7.022199E-4	45.0	14
CGTCTCG	20	7.022199E-4	45.0	42
TCTAGAC	20	7.022199E-4	45.0	19
TAGCACG	20	7.022199E-4	45.0	21
GTAGACG	25	3.8816186E-5	45.0	1
ATGACGG	25	3.8816186E-5	45.0	2
TCGTAGG	25	3.8816186E-5	45.0	2
CAGTACG	20	7.022199E-4	45.0	1
CGATAGG	20	7.022199E-4	45.0	2
AGTACGG	20	7.022199E-4	45.0	2
GTCGATG	30	2.1583528E-6	44.999996	1
TGCGTAG	30	2.1583528E-6	44.999996	1
CCGATGA	155	0.0	42.096775	18
CTACGAA	60	3.6379788E-12	41.249996	11
TACGAAT	60	3.6379788E-12	41.249996	12
CGAATAT	55	6.002665E-11	40.909092	14
CGATGAA	165	0.0	40.90909	19
CCCTAGC	50	1.0732037E-9	40.5	21