SRR2935552.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935552.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	458715
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2689	0.5862027620635907	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTC	2508	0.546744710768124	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGC	1777	0.3873865036024547	No Hit
GCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCTGC	1496	0.32612842396695113	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCG	1459	0.3180624134811375	No Hit
CTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCTGCT	746	0.16262821141667486	No Hit
CCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCTGC	692	0.15085619611305495	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTT	683	0.14889419356245165	No Hit
GAACTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCT	560	0.1220801587042063	No Hit
CGCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCTG	554	0.1207721570038041	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	459	0.1000621300807691	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTACGG	35	1.2097917E-7	45.000004	2
ATATGCG	20	7.0288486E-4	45.000004	1
TAACGCG	20	7.0288486E-4	45.000004	1
TAGCACG	20	7.0288486E-4	45.000004	1
GGGCGTA	20	7.0288486E-4	45.000004	7
TCACGAC	25	3.8871272E-5	45.0	25
TCGATAG	25	3.8871272E-5	45.0	1
CGGTCTA	25	3.8871272E-5	45.0	31
GCTACGA	50	2.1827873E-11	45.0	10
CTACGGG	105	0.0	40.714287	3
CGGGTAT	50	1.0786607E-9	40.5	6
CGAATAT	50	1.0786607E-9	40.5	14
CGTAAGG	45	1.9239451E-8	40.0	2
CGTTTTT	1200	0.0	39.937504	1
ACAACGA	155	0.0	39.19355	13
ACGGGAG	220	0.0	38.863636	5
TAGGGAC	320	0.0	38.67188	5
ACTAGCG	35	6.2400813E-6	38.57143	1
ATACACG	35	6.2400813E-6	38.57143	1
CACAACG	160	0.0	37.968754	12