SRR2935550.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935550.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	153932
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCTGC	1097	0.7126523399942831	TruSeq Adapter, Index 13 (95% over 21bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGC	1068	0.693812852428345	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTC	1056	0.6860172024010602	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCG	923	0.599615414598654	No Hit
CCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCTGC	747	0.4852792141984773	TruSeq Adapter, Index 13 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	539	0.35015461372554113	No Hit
CTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCTGCT	408	0.26505210092768233	TruSeq Adapter, Index 16 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCTGC	330	0.2143803757503313	TruSeq Adapter, Index 13 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCT	249	0.1617597380661591	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	238	0.15461372554114802	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGTATCTGT	208	0.1351246004729361	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCC	196	0.12732895044565132	No Hit
GAACTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCT	192	0.1247304004365564	No Hit
CGCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCTG	156	0.10134345035470209	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATAGGGA	35	1.2027704E-7	45.000004	4
GCGAAGG	35	1.2027704E-7	45.000004	2
GCGCGAC	30	2.1532232E-6	45.000004	9
CGACCTC	30	2.1532232E-6	45.000004	12
AGGGTAC	35	1.2027704E-7	45.000004	6
CGCGACC	30	2.1532232E-6	45.000004	10
ACGGGAT	30	2.1532232E-6	45.000004	5
GGGCGCG	30	2.1532232E-6	45.000004	7
ACGTGGC	30	2.1532232E-6	45.000004	26
TCAGACG	30	2.1532232E-6	45.000004	22
TCGTCCC	30	2.1532232E-6	45.000004	38
CGGGACA	35	1.2027704E-7	45.000004	6
GACGGGA	45	3.8016879E-10	45.000004	4
CCCCATT	30	2.1532232E-6	45.000004	42
GGCGCGA	30	2.1532232E-6	45.000004	8
CTAATCC	35	1.2027704E-7	45.000004	11
TTGATAG	20	7.0142373E-4	45.0	31
AAACTCA	20	7.0142373E-4	45.0	20
CTATGCT	20	7.0142373E-4	45.0	36
CGGCGGG	20	7.0142373E-4	45.0	3