SRR2935549.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935549.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	158516
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCATACCGCATCGTATGCCGTCTTCTGC	898	0.5665043276388503	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATACCGCATCGTATGC	636	0.4012213278154887	No Hit
GAATCTGTCTCTTATACACATCTGACGCATACCGCATCGTATGCCGTCTTC	574	0.36210855686492216	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATACCGCATCGTATGCCG	568	0.3583234499987383	No Hit
CCTGTCTCTTATACACATCTGACGCATACCGCATCGTATGCCGTCTTCTGC	541	0.34129046910091093	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	467	0.29460748441797674	No Hit
CTGTCTCTTATACACATCTGACGCATACCGCATCGTATGCCGTCTTCTGCT	382	0.2409851371470388	No Hit
TCTGTCTCTTATACACATCTGACGCATACCGCATCGTATGCCGTCTTCTGC	254	0.16023619066844988	No Hit
ACTGTCTCTTATACACATCTGACGCATACCGCATCGTATGCCGTCTTCTGC	177	0.11166065255242372	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCATACCGCATCGTATGCC	159	0.10030533195387217	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCATAC	30	2.1536325E-6	45.000004	39
CGGAACG	20	7.014874E-4	45.000004	27
AGCCGGC	20	7.014874E-4	45.000004	20
GTACCGG	20	7.014874E-4	45.000004	2
GGCACTA	20	7.014874E-4	45.000004	8
CGGCCAA	20	7.014874E-4	45.000004	15
TTGTACG	20	7.014874E-4	45.000004	24
TACGGAC	20	7.014874E-4	45.000004	27
CGACACA	20	7.014874E-4	45.000004	38
AGGCGAC	20	7.014874E-4	45.000004	35
TATGCAG	40	6.7520887E-9	45.000004	1
GCCGATG	20	7.014874E-4	45.000004	9
CCTCCGC	30	2.1536325E-6	45.000004	45
GTGCTAG	30	2.1536325E-6	45.000004	1
GGAACGC	20	7.014874E-4	45.000004	28
TGTTACG	20	7.014874E-4	45.000004	1
TAGGGCG	20	7.014874E-4	45.000004	5
CCGACGG	20	7.014874E-4	45.000004	2
CGTAAGG	30	2.1536325E-6	45.000004	2
CATCGAA	20	7.014874E-4	45.000004	42