SRR2935548.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935548.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	429232
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTC	4061	0.9461083982554889	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGC	3679	0.8571122376710032	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCG	3308	0.7706787937525628	No Hit
GCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTCTGC	2061	0.48015991351996123	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1718	0.40024974838781824	No Hit
CCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTCTGC	992	0.23111044842882172	No Hit
CTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTCTGCT	823	0.19173780146866962	Illumina Single End Adapter 2 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCT	784	0.18265180601632683	No Hit
GAACTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTCT	774	0.18032206359264918	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	737	0.17170201662504192	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAAGAGCGTT	693	0.16145114996086032	No Hit
CGCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTCTG	636	0.1481716181458978	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTC	589	0.1372218287546129	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTA	580	0.135125060573303	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTT	522	0.12161255451597272	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCC	443	0.10320758936891937	No Hit
TCTGTCTCTTATACACATCTGACGCAAGAGCGTTCGTATGCCGTCTTCTGC	443	0.10320758936891937	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGCGAC	45	3.8380676E-10	45.000004	9
CGAACCC	40	6.7975634E-9	45.0	34
CGCGGGT	20	7.028342E-4	45.0	2
CCGATCG	20	7.028342E-4	45.0	40
GCGAACC	40	6.7975634E-9	45.0	33
TACGGGT	20	7.028342E-4	45.0	4
GTGCTAG	25	3.8867074E-5	45.0	1
CTACGCG	20	7.028342E-4	45.0	1
CGTAAGC	20	7.028342E-4	45.0	43
AGTACGG	40	6.7975634E-9	45.0	2
GTACGAG	25	3.8867074E-5	45.0	1
TCGTTGA	30	2.162311E-6	44.999996	24
CGTTGAT	30	2.162311E-6	44.999996	25
GTTAGCG	30	2.162311E-6	44.999996	1
TCGTGTA	30	2.162311E-6	44.999996	17
CGTGTAC	30	2.162311E-6	44.999996	18
TAGTACG	30	2.162311E-6	44.999996	1
GGCGAAC	105	0.0	42.857143	32
CGTTTTT	975	0.0	42.69231	1
TGCGGGT	85	0.0	42.35294	4