##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935547.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 742111 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.193714956387925 31.0 31.0 33.0 28.0 34.0 2 31.20309630230518 31.0 31.0 34.0 28.0 34.0 3 30.99404940770316 31.0 31.0 34.0 27.0 34.0 4 34.8073778720434 35.0 35.0 37.0 32.0 37.0 5 34.83088109460714 35.0 35.0 37.0 33.0 37.0 6 35.01373379454017 36.0 35.0 37.0 32.0 37.0 7 35.4306269547278 37.0 35.0 37.0 33.0 37.0 8 35.187445004857764 37.0 35.0 37.0 32.0 37.0 9 37.11771015387186 39.0 37.0 39.0 33.0 39.0 10 36.4514998430154 38.0 35.0 39.0 32.0 39.0 11 36.71041528827898 39.0 37.0 39.0 32.0 39.0 12 36.88979950438681 39.0 37.0 39.0 33.0 39.0 13 36.969162295128356 39.0 37.0 39.0 33.0 39.0 14 38.076475082568514 40.0 37.0 41.0 33.0 41.0 15 38.22007354694917 40.0 37.0 41.0 33.0 41.0 16 38.18442119844605 40.0 37.0 41.0 34.0 41.0 17 38.05084684097123 40.0 37.0 41.0 33.0 41.0 18 37.98985326992862 39.0 37.0 41.0 33.0 41.0 19 37.838495858436275 39.0 37.0 41.0 33.0 41.0 20 37.80197706273051 39.0 36.0 41.0 33.0 41.0 21 37.81297811243871 39.0 36.0 41.0 33.0 41.0 22 37.92215315498625 40.0 36.0 41.0 33.0 41.0 23 37.95164200503698 40.0 36.0 41.0 34.0 41.0 24 37.91023445279749 40.0 36.0 41.0 33.0 41.0 25 37.53073731557678 39.0 36.0 41.0 33.0 41.0 26 37.59397583380384 39.0 36.0 41.0 33.0 41.0 27 37.655217346192146 40.0 36.0 41.0 33.0 41.0 28 37.548779090998515 40.0 36.0 41.0 33.0 41.0 29 37.48791757567264 40.0 36.0 41.0 33.0 41.0 30 37.176807782124236 39.0 35.0 41.0 32.0 41.0 31 37.12878531648231 39.0 35.0 41.0 32.0 41.0 32 36.96601586555111 39.0 35.0 41.0 31.0 41.0 33 36.865024234919034 39.0 35.0 41.0 31.0 41.0 34 36.74112767497046 39.0 35.0 41.0 31.0 41.0 35 36.67073658792283 40.0 35.0 41.0 30.0 41.0 36 36.55158325371811 39.0 35.0 41.0 30.0 41.0 37 36.504145606250276 39.0 35.0 41.0 30.0 41.0 38 36.387648208960655 39.0 35.0 41.0 30.0 41.0 39 36.27873323532464 39.0 35.0 41.0 30.0 41.0 40 36.22081737098628 39.0 35.0 41.0 30.0 41.0 41 36.103279698050564 39.0 35.0 41.0 29.0 41.0 42 36.1417186916782 39.0 35.0 41.0 29.0 41.0 43 36.129707011484804 39.0 35.0 41.0 29.0 41.0 44 36.111192260996 39.0 35.0 41.0 29.0 41.0 45 36.081041784854285 39.0 35.0 41.0 29.0 41.0 46 35.95502963842336 39.0 35.0 41.0 28.0 41.0 47 35.90090026963621 39.0 35.0 41.0 28.0 41.0 48 35.83539389660037 39.0 35.0 40.0 28.0 41.0 49 35.82369079558179 39.0 35.0 40.0 28.0 41.0 50 35.735790198501306 39.0 35.0 40.0 28.0 41.0 51 34.616030486005464 37.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 7.0 8 24.0 9 48.0 10 53.0 11 37.0 12 35.0 13 28.0 14 36.0 15 44.0 16 83.0 17 163.0 18 325.0 19 521.0 20 986.0 21 1666.0 22 2510.0 23 3380.0 24 4816.0 25 6981.0 26 9119.0 27 9789.0 28 10074.0 29 10365.0 30 12025.0 31 15146.0 32 19229.0 33 27291.0 34 45229.0 35 52985.0 36 60211.0 37 92469.0 38 165356.0 39 191053.0 40 27.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.63620940802656 19.96561161335703 22.403521845114817 14.994657133501594 2 35.18732372919954 24.937239846869268 23.38491142160674 16.49052500232445 3 30.452048278492033 24.52436360598347 29.14267542187085 15.880912693653645 4 27.62524743603046 23.50537857544222 30.319184057371473 18.550189931155852 5 25.519497757074078 28.363546693149676 26.76553776995625 19.35141777982 6 23.6708524735518 34.72485921917341 27.080584979874978 14.52370332739981 7 75.45569328577531 5.507127639935265 14.292875324580825 4.744303749708602 8 76.06314958274436 6.880507093952253 11.996318610019257 5.060024713284132 9 69.84076506075236 7.533374387389488 13.897381928040414 8.72847862381773 10 37.338214903161386 26.928586154901357 20.984461893166927 14.748737048770334 11 27.163187178198413 24.711936624036028 28.86077689186658 19.26409930589898 12 24.7080288528266 21.509585493275267 32.94520631010725 20.837179343790886 13 23.210543975227427 22.61804500943929 34.852872413965024 19.31853860136826 14 19.426878189381373 27.696395822188325 32.01946878566683 20.857257202763467 15 18.515154741002355 26.42273190937744 35.693986479111615 19.36812687050859 16 21.193595028237016 24.93373632785392 33.02228372844493 20.85038491546413 17 20.519437119244966 26.026969011374305 31.441657649596895 22.011936219783834 18 21.509046490349824 26.1687267807646 30.560657367967863 21.761569360917708 19 22.025276542188433 27.612715618014015 29.09066163956605 21.271346200231502 20 24.242330325247842 26.192442909483894 30.510530095902094 19.054696669366173 21 23.0522118658799 27.307505211484536 30.213269982522828 19.427012940112732 22 21.243452798840064 24.09949455000667 31.062469091550994 23.59458355960227 23 22.00883695296256 26.170882792466355 30.865194020840548 20.955086233730533 24 22.044545896772856 25.149067996566547 30.625337719020468 22.181048387640125 25 21.317565701087844 27.770778225898823 28.766720881377584 22.144935191635753 26 20.68733653051902 26.70260917841132 30.05022159757772 22.559832693491945 27 22.739859670588363 26.707190703277544 29.237000933822564 21.31594869231153 28 20.614705886316198 27.406142746839755 30.57062892208847 21.40852244475557 29 23.398386494742702 25.114841310801218 29.856315295151266 21.63045689930482 30 22.521832987248537 26.60504964890697 30.253695201930707 20.619422161913782 31 24.112565370948552 26.01403294116379 27.560432334246492 22.312969353641165 32 24.333960822572365 26.895437474986895 29.018030995363226 19.752570707077513 33 21.980943551571126 26.021444231388568 29.6320900781689 22.36552213887141 34 22.008163199305763 25.61234101098084 29.40840386411197 22.971091925601424 35 21.416472737905785 26.919557855900262 28.513659007884268 23.15031039830969 36 22.078368330344116 28.15683907124406 27.242151106775133 22.522641491636698 37 21.390735348216104 27.879117813911936 29.169086565217334 21.56106027265463 38 21.146162770798437 27.393341427360596 28.370553731180376 23.089942070660587 39 22.112190763915372 24.83038251690111 29.161136272067118 23.896290447116403 40 21.813717893953868 25.160791310194835 31.184822755625508 21.84066804022579 41 19.34858801446145 26.933167679767582 28.861720146986098 24.85652415878487 42 21.35448740148037 27.43996518041102 28.707969562504797 22.49757785560381 43 22.439500290387826 25.549008167241826 28.52147455030312 23.490016992067225 44 21.92960352292312 25.29217327327044 28.77264991355741 24.005573290249032 45 21.635577427096486 24.340024605483546 28.868457683554077 25.155940283865892 46 23.161359958281174 26.064968717617713 27.77023922297338 23.00343210112773 47 20.94996570593887 25.534455088254994 31.259339910067364 22.256239295738776 48 20.76697421275254 25.235712716830772 29.541537586695256 24.455775483721435 49 20.399913220529005 24.57489513024332 31.410530230652828 23.61466141857485 50 19.80714475327815 23.924857602164636 31.87097347970856 24.397024164848656 51 19.825470852743056 23.423450130775585 29.92113039693523 26.829948619546133 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 283.0 1 602.0 2 921.0 3 6241.0 4 11561.0 5 7712.5 6 3864.0 7 3770.5 8 3677.0 9 3604.0 10 3531.0 11 3453.5 12 3376.0 13 3212.5 14 3049.0 15 2920.0 16 2791.0 17 2762.0 18 2733.0 19 2707.0 20 2681.0 21 2781.5 22 2882.0 23 3121.0 24 3360.0 25 4022.0 26 5542.5 27 6401.0 28 7640.5 29 8880.0 30 10518.0 31 12156.0 32 14179.5 33 16203.0 34 17959.0 35 19715.0 36 21368.5 37 23022.0 38 25088.0 39 27154.0 40 30199.0 41 33244.0 42 36335.0 43 39426.0 44 43644.5 45 47863.0 46 63751.5 47 79640.0 48 74299.0 49 68958.0 50 67777.0 51 66596.0 52 58024.0 53 49452.0 54 45113.5 55 40775.0 56 37156.0 57 33537.0 58 31571.0 59 29605.0 60 28795.0 61 27985.0 62 24756.0 63 21527.0 64 18361.0 65 15195.0 66 12439.0 67 9683.0 68 7933.5 69 6184.0 70 4981.5 71 3779.0 72 3136.0 73 2493.0 74 2126.5 75 1200.0 76 640.0 77 579.0 78 518.0 79 349.0 80 180.0 81 125.0 82 70.0 83 58.0 84 46.0 85 34.0 86 22.0 87 12.0 88 2.0 89 3.5 90 5.0 91 2.5 92 0.0 93 0.0 94 0.0 95 0.5 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 742111.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.642184993400775 #Duplication Level Percentage of deduplicated Percentage of total 1 73.11297896553114 26.05906321708081 2 9.029909831408368 6.436914333695711 3 3.467645554102633 3.7078339299260943 4 2.1223832587055727 3.0258550693472324 5 1.523370026877516 2.7148118155685173 6 1.2396445026915128 2.6510183214589924 7 1.0404117471645242 2.59577835732217 8 0.923934088672829 2.63448237681489 9 0.8517207055557443 2.7321468255114905 >10 6.597858102288509 38.96071735273899 >50 0.054620678681372416 1.3476486984183302 >100 0.02826524554515397 1.913173730989439 >500 0.0030557022210977143 0.8083986063200217 >1k 0.003437664998734928 2.568551112401457 >5k 7.639255552744286E-4 1.8436062524058157 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6994 0.9424466151290035 No Hit GAATCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTC 6548 0.8823477889426244 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGC 4072 0.5487049780962686 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCG 3626 0.4886061519098895 No Hit GCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTCTGC 2455 0.3308130454878044 TruSeq Adapter, Index 19 (95% over 21bp) GAACTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTCT 1852 0.24955835447796892 No Hit CGTTTCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTT 1780 0.23985630182007814 No Hit CGCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTCTG 1527 0.20576436678610074 No Hit CGTTCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTC 1392 0.18757301805255547 No Hit CCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTCTGC 1119 0.1507860683913862 TruSeq Adapter, Index 19 (95% over 21bp) CGTTTTCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCT 1044 0.1406797635394166 No Hit CTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTCTGCT 877 0.11817639140236434 TruSeq Adapter, Index 13 (95% over 22bp) CGTCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTCT 871 0.11736788701420676 No Hit GAATGACTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCT 864 0.11642463189468961 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTC 744 0.10025454413153828 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.0425219407878334E-4 0.0 0.0 0.12262316553723095 0.0 2 4.0425219407878334E-4 0.0 0.0 0.7148526298626485 0.0 3 4.0425219407878334E-4 0.0 0.0 1.0939064371771878 0.0 4 4.0425219407878334E-4 0.0 0.0 1.7465042291517037 0.0 5 4.0425219407878334E-4 0.0 0.0 3.6789644675796476 0.0 6 4.0425219407878334E-4 0.0 0.0 4.849948323094524 0.0 7 4.0425219407878334E-4 0.0 0.0 5.731083355454912 0.0 8 4.0425219407878334E-4 0.0 0.0 6.912982020209915 0.0 9 4.0425219407878334E-4 0.0 0.0 7.394985386283184 0.0 10 4.0425219407878334E-4 0.0 0.0 8.736294166236588 0.0 11 4.0425219407878334E-4 0.0 0.0 9.81847728978549 0.0 12 4.0425219407878334E-4 0.0 0.0 11.220423898850711 0.0 13 4.0425219407878334E-4 0.0 0.0 11.66254104844154 0.0 14 4.0425219407878334E-4 0.0 0.0 11.874638699601542 0.0 15 4.0425219407878334E-4 0.0 0.0 12.234962155257097 0.0 16 4.0425219407878334E-4 0.0 0.0 12.785014640666962 0.0 17 4.0425219407878334E-4 0.0 0.0 13.434513165820208 0.0 18 5.390029254383779E-4 0.0 0.0 14.144245267891192 0.0 19 5.390029254383779E-4 0.0 0.0 14.687155964538997 0.0 20 5.390029254383779E-4 0.0 0.0 15.12873411120439 0.0 21 5.390029254383779E-4 0.0 0.0 15.64685067328203 0.0 22 6.737536567979723E-4 0.0 0.0 16.240158143458324 0.0 23 6.737536567979723E-4 0.0 0.0 16.831444352664224 0.0 24 6.737536567979723E-4 0.0 0.0 17.303206663154164 0.0 25 6.737536567979723E-4 0.0 0.0 17.725515455235133 0.0 26 6.737536567979723E-4 0.0 0.0 18.09500196062314 0.0 27 6.737536567979723E-4 0.0 0.0 18.509090958091175 0.0 28 6.737536567979723E-4 0.0 0.0 18.90660561560198 0.0 29 6.737536567979723E-4 0.0 0.0 19.332148425235577 0.0 30 6.737536567979723E-4 0.0 0.0 19.831804137116954 0.0 31 8.085043881575667E-4 0.0 0.0 20.280524072544402 0.0 32 8.085043881575667E-4 0.0 0.0 20.74312333330189 0.0 33 8.085043881575667E-4 0.0 0.0 21.170148400980445 0.0 34 8.085043881575667E-4 0.0 0.0 21.589762178434224 0.0 35 8.085043881575667E-4 0.0 0.0 22.03619135142856 0.0 36 8.085043881575667E-4 0.0 0.0 22.48410278246785 0.0 37 8.085043881575667E-4 0.0 0.0 22.939156002269204 0.0 38 8.085043881575667E-4 0.0 0.0 23.394882975727352 0.0 39 8.085043881575667E-4 0.0 0.0 23.831475345332436 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTTCGT 20 7.03167E-4 45.0 15 CGTTTTT 3640 0.0 43.02198 1 CTCGAAT 85 0.0 42.35294 43 TAGTGCG 60 3.6379788E-12 41.250004 1 TACGGCT 520 0.0 41.105766 7 GCGTTAG 50 1.0804797E-9 40.5 1 GCCGATT 45 1.9266736E-8 40.0 9 TGTTGCG 85 0.0 39.705883 1 GTAAGCG 40 3.456007E-7 39.375 1 AAATCGG 35 6.2452964E-6 38.571426 2 CGATAAG 35 6.2452964E-6 38.571426 10 CGATGAA 535 0.0 38.271027 19 CGTCTCG 30 1.1395318E-4 37.500004 41 AATAGCG 30 1.1395318E-4 37.500004 1 TCGAATG 85 0.0 37.058823 44 GCGAACC 55 2.746674E-9 36.81818 33 CACGACG 55 2.746674E-9 36.81818 26 GATGAAT 575 0.0 36.782608 20 CGAGATA 245 0.0 36.734695 19 CGCATGG 80 0.0 36.5625 2 >>END_MODULE