SRR2935546.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935546.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	468594
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6325	1.3497825409629658	No Hit
GAATCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTC	3885	0.8290759164649995	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCG	1704	0.3636410197313666	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGC	1666	0.3555316542678737	No Hit
GAACTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCT	1314	0.280413321553413	No Hit
GCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCTGC	1290	0.27529161705015426	TruSeq Adapter, Index 13 (95% over 23bp)
CGTTTCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTT	1211	0.2584326730602611	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTC	1056	0.2253549981433821	No Hit
CGCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCTG	997	0.21276414123953788	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCT	770	0.1643213528128828	No Hit
CCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCTGC	618	0.13188389095891112	TruSeq Adapter, Index 13 (95% over 23bp)
GAATGCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTT	610	0.13017665612449156	No Hit
CGTCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCT	581	0.12398792984972065	No Hit
CTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCTGCT	520	0.1109702642372715	TruSeq Adapter, Index 16 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	50	2.1827873E-11	45.0	25
TTAATCG	20	7.029004E-4	45.0	20
AACGGGC	45	3.8380676E-10	45.0	4
ACGGGCC	30	2.1627402E-6	44.999996	5
CGTTTTT	3125	0.0	43.704	1
CGGCGAA	65	0.0	41.538464	31
CGGTCTA	50	1.0786607E-9	40.5	31
GTGCACG	40	3.452369E-7	39.375	1
TTGTGCG	40	3.452369E-7	39.375	1
TACGGGA	145	0.0	38.793106	4
CCATACG	65	9.094947E-12	38.076927	2
CTATGTA	30	1.1388902E-4	37.499996	30
TGCGCAG	60	1.546141E-10	37.499996	1
CGGGCGA	120	0.0	37.499996	6
TTTGACG	30	1.1388902E-4	37.499996	1
GTAGTAT	30	1.1388902E-4	37.499996	45
ATTACGG	55	2.741217E-9	36.818184	2
ACGGTCT	55	2.741217E-9	36.818184	30
GTTTTTT	3810	0.0	36.377956	2
TTACGGG	155	0.0	36.29032	3