##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935546.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 468594 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.122545316414637 31.0 31.0 33.0 28.0 34.0 2 31.166199311130743 31.0 31.0 34.0 28.0 34.0 3 30.92541731221484 31.0 30.0 34.0 27.0 34.0 4 34.72025036598847 35.0 35.0 37.0 32.0 37.0 5 34.763708028698616 35.0 35.0 37.0 32.0 37.0 6 34.94760496293166 36.0 35.0 37.0 32.0 37.0 7 35.35569810966423 37.0 35.0 37.0 33.0 37.0 8 35.17656222657567 37.0 35.0 37.0 32.0 37.0 9 37.10824509063283 39.0 37.0 39.0 34.0 39.0 10 36.43790146694153 38.0 35.0 39.0 32.0 39.0 11 36.64065480992074 39.0 35.0 39.0 32.0 39.0 12 36.79601317985292 39.0 35.0 39.0 33.0 39.0 13 36.84061682394567 39.0 37.0 39.0 33.0 39.0 14 37.84696346944263 40.0 37.0 41.0 33.0 41.0 15 38.03305206639436 40.0 37.0 41.0 33.0 41.0 16 38.026560305936485 40.0 37.0 41.0 33.0 41.0 17 37.911053065126744 40.0 37.0 41.0 33.0 41.0 18 37.82302376897698 39.0 37.0 41.0 33.0 41.0 19 37.63254971254433 39.0 37.0 40.0 33.0 41.0 20 37.5781806851987 39.0 35.0 41.0 33.0 41.0 21 37.5454935402502 39.0 35.0 41.0 33.0 41.0 22 37.65820945210566 39.0 35.0 41.0 33.0 41.0 23 37.71990038284741 39.0 35.0 41.0 33.0 41.0 24 37.67384985723249 39.0 35.0 41.0 33.0 41.0 25 37.268836135332506 39.0 35.0 41.0 32.0 41.0 26 37.318535875406 39.0 35.0 41.0 33.0 41.0 27 37.3738801606508 39.0 35.0 41.0 33.0 41.0 28 37.240993269226664 39.0 35.0 41.0 33.0 41.0 29 37.21289004980858 39.0 35.0 41.0 32.0 41.0 30 36.88635364515977 39.0 35.0 41.0 31.0 41.0 31 36.82351886707897 39.0 35.0 41.0 31.0 41.0 32 36.66817970353867 39.0 35.0 41.0 31.0 41.0 33 36.51546114546921 39.0 35.0 41.0 30.0 41.0 34 36.31658322556414 39.0 35.0 41.0 30.0 41.0 35 36.250073624502235 39.0 35.0 41.0 30.0 41.0 36 36.08431606038489 39.0 35.0 41.0 29.0 41.0 37 36.07775387649009 39.0 35.0 41.0 29.0 41.0 38 35.92360764329035 39.0 35.0 41.0 28.0 41.0 39 35.82484837620627 39.0 35.0 41.0 27.0 41.0 40 35.725280306619375 39.0 35.0 41.0 27.0 41.0 41 35.566138277485415 39.0 35.0 40.0 26.0 41.0 42 35.60883195260716 39.0 35.0 41.0 26.0 41.0 43 35.584638300959895 39.0 35.0 40.0 26.0 41.0 44 35.56421977234024 39.0 35.0 40.0 26.0 41.0 45 35.55378429941484 39.0 35.0 40.0 26.0 41.0 46 35.45391746373193 38.0 35.0 40.0 26.0 41.0 47 35.41504159250865 38.0 35.0 40.0 26.0 41.0 48 35.34740308241249 38.0 35.0 40.0 26.0 41.0 49 35.33905257002864 38.0 35.0 40.0 26.0 41.0 50 35.242467893314895 38.0 35.0 40.0 26.0 41.0 51 34.146922495806606 37.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 20.0 9 22.0 10 34.0 11 19.0 12 18.0 13 21.0 14 31.0 15 42.0 16 66.0 17 121.0 18 222.0 19 368.0 20 663.0 21 1090.0 22 1654.0 23 2445.0 24 3791.0 25 5401.0 26 6959.0 27 7605.0 28 7573.0 29 7647.0 30 8468.0 31 10381.0 32 13540.0 33 18606.0 34 30569.0 35 33975.0 36 38856.0 37 58099.0 38 99269.0 39 111011.0 40 7.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.4384307097402 19.469519456074984 22.204936469523723 16.887113364661094 2 37.006235675232716 23.746142716295985 22.975966401618457 16.27165520685284 3 29.938710269444336 23.95527898351238 30.36658599982074 15.739424747222541 4 26.611736385869218 23.501154517556778 31.483117581531133 18.403991515042872 5 24.866515576383822 27.86954165012783 28.594689646047538 18.669253127440815 6 23.572858380602398 32.8941471721789 28.785259734439624 14.747734712779078 7 74.03018391187254 5.4772361575265585 15.447487590536799 5.045092340064106 8 75.27155704084986 5.904471674840053 13.881526438665453 4.942444845644631 9 69.5333273580114 6.714768008126438 15.544586571744409 8.20731806211774 10 37.21750598599214 26.077371882695893 22.365416543959164 14.339705587352805 11 27.006747845683044 24.05493881697162 30.424631984191002 18.51368135315433 12 23.745502503233077 21.27065220638762 34.53287920886738 20.450966081511925 13 23.773671878001 21.456100590276446 36.644301890335775 18.125925641386786 14 19.825051110342855 25.83003623605936 34.53095856967865 19.81395408391913 15 18.994908172106342 24.932457521863277 36.7520710892585 19.320563216771873 16 22.631958582482916 25.057299069130206 32.88240993269227 19.42833241569461 17 22.830851440692797 25.63711869976995 31.365531782310484 20.16649807722677 18 22.857526984980602 24.52955010094026 32.214667708079915 20.398255205999224 19 22.16524325962347 26.37528436130211 30.389633670085402 21.069838708989018 20 23.15159818520937 26.46299355092041 31.148712958339203 19.236695305531015 21 22.723722454832966 26.550489336184413 32.65257344310854 18.07321476587408 22 21.617434282129093 23.115319444977956 33.32052907207519 21.946717200817766 23 21.070692326406228 25.17467146399655 32.93255995595334 20.82207625364388 24 21.646670678668528 25.095285044196043 31.772707290319552 21.485336986815877 25 22.24804414909282 26.394063944480724 29.96773326162947 21.39015864479699 26 20.76723133458815 25.05409800381567 30.96369138315898 23.214979278437198 27 21.860928650388185 25.02955650307089 31.339283046731286 21.770231799809643 28 19.517535435793032 25.875277959171477 31.766518564044784 22.840668040990707 29 20.96783142763245 25.219486378400063 30.90671242056023 22.905969773407257 30 21.108251492763458 27.008881889226068 30.842050901206587 21.040815716803884 31 21.596734059761754 25.377405600583874 30.319850446228504 22.706009893425865 32 21.766817330140803 27.594036628723373 28.91671681668993 21.722429224445897 33 20.98255632807932 27.135003862618813 28.982445357815077 22.899994451486787 34 19.769992786932825 26.049842720990878 29.9444721870105 24.235692305065793 35 19.624237612944253 27.540045327084854 28.26903460138201 24.566682458588886 36 20.513280152968242 27.601505781123958 27.726133924036585 24.159080141871215 37 19.791973435425977 28.03727747260955 28.54091174876332 23.629837343201153 38 19.800723013952375 28.10599367469494 27.96130552247788 24.131977788874803 39 20.872439681259255 26.153557237181868 27.559038314617773 25.414964766941107 40 21.302662859532987 25.08141376116638 29.642931834381148 23.972991544919484 41 19.58198355079237 25.510783322022903 28.77032142963845 26.136911697546278 42 20.211739800338886 25.748302368361525 29.715702719198283 24.324255112101305 43 21.199161747696298 24.883161116019412 29.586593084845305 24.331084051438985 44 21.28473689377158 25.187902533963303 29.557783497014473 23.96957707525064 45 21.093739996670894 24.52955010094026 28.877237011143976 25.499472891244874 46 21.8536729023419 25.754917903344897 28.318117602871567 24.07329159144163 47 19.616981864897973 25.34987643887886 31.668139156711355 23.365002539511817 48 19.79730854428354 25.45124350717252 29.9094738729049 24.84197407563904 49 20.6929666192909 24.527629461751538 31.212734264629937 23.566669654327626 50 19.51113330516396 24.34346150398853 31.69289406181044 24.452511129037077 51 19.53930267993188 23.771537834457973 29.87789002846814 26.811269457142007 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 221.0 1 405.5 2 590.0 3 5217.0 4 9844.0 5 6448.5 6 3053.0 7 2989.5 8 2926.0 9 2892.0 10 2858.0 11 2793.0 12 2728.0 13 2626.0 14 2524.0 15 2444.0 16 2364.0 17 2214.5 18 2065.0 19 1911.0 20 1757.0 21 1922.0 22 2087.0 23 2265.0 24 2443.0 25 2640.5 26 3395.0 27 3952.0 28 4458.0 29 4964.0 30 5922.0 31 6880.0 32 7837.5 33 8795.0 34 10050.0 35 11305.0 36 12545.5 37 13786.0 38 15248.5 39 16711.0 40 18606.5 41 20502.0 42 22041.5 43 23581.0 44 26385.0 45 29189.0 46 38590.0 47 47991.0 48 45999.5 49 44008.0 50 43134.5 51 42261.0 52 37382.5 53 32504.0 54 29358.5 55 26213.0 56 24403.0 57 22593.0 58 20940.5 59 19288.0 60 17526.0 61 15764.0 62 14338.0 63 12912.0 64 11190.5 65 9469.0 66 7935.0 67 6401.0 68 5476.5 69 4552.0 70 3672.0 71 2792.0 72 2204.5 73 1617.0 74 1301.5 75 825.5 76 665.0 77 493.0 78 321.0 79 225.5 80 130.0 81 110.0 82 90.0 83 66.5 84 43.0 85 28.5 86 14.0 87 10.5 88 7.0 89 5.5 90 4.0 91 3.0 92 2.0 93 2.0 94 2.0 95 1.0 96 0.0 97 1.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 468594.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.04565210317632 #Duplication Level Percentage of deduplicated Percentage of total 1 72.3350021692607 29.690373339219793 2 9.09431004702971 7.465637726176051 3 4.241181210423192 5.222461454086757 4 2.6408211209440426 4.335768999879572 5 2.0884847705421805 4.286160965722819 6 1.624818242266877 4.001503458178843 7 1.3524660222307943 3.8858994880896343 8 1.13119730869902 3.714458495432746 9 0.9199859914884824 3.398528245178878 >10 4.515988719659905 26.826123599579994 >50 0.03050165143769784 0.8485268003389036 >100 0.01788027842899003 1.457670181299241 >500 0.003155343252174711 0.8841429087222997 >1k 0.0036812337942038293 2.6174601833902846 >5k 5.258905420291185E-4 1.365284154704235 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6325 1.3497825409629658 No Hit GAATCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTC 3885 0.8290759164649995 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCG 1704 0.3636410197313666 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGC 1666 0.3555316542678737 No Hit GAACTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCT 1314 0.280413321553413 No Hit GCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCTGC 1290 0.27529161705015426 TruSeq Adapter, Index 13 (95% over 23bp) CGTTTCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTT 1211 0.2584326730602611 No Hit CGTTCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTC 1056 0.2253549981433821 No Hit CGCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCTG 997 0.21276414123953788 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCT 770 0.1643213528128828 No Hit CCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCTGC 618 0.13188389095891112 TruSeq Adapter, Index 13 (95% over 23bp) GAATGCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTT 610 0.13017665612449156 No Hit CGTCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCT 581 0.12398792984972065 No Hit CTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCTGCT 520 0.1109702642372715 TruSeq Adapter, Index 16 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.1340435430244518E-4 0.0 0.0 0.11694558615773996 0.0 2 4.2680870860489035E-4 0.0 0.0 0.6278356103577938 0.0 3 4.2680870860489035E-4 0.0 0.0 1.020072813565688 0.0 4 4.2680870860489035E-4 0.0 0.0 1.6880284425323415 0.0 5 4.2680870860489035E-4 0.0 0.0 3.512208863109643 0.0 6 4.2680870860489035E-4 0.0 0.0 4.777269875414538 0.0 7 6.402130629073355E-4 0.0 0.0 5.7565824573084585 0.0 8 6.402130629073355E-4 0.0 0.0 7.01609495640149 0.0 9 6.402130629073355E-4 0.0 0.0 7.662069936874992 0.0 10 8.536174172097807E-4 0.0 0.0 8.91518030533895 0.0 11 8.536174172097807E-4 0.0 0.0 9.939948014699292 0.0 12 8.536174172097807E-4 0.0 0.0 11.064162153164574 0.0 13 8.536174172097807E-4 0.0 0.0 11.490330648706557 0.0 14 8.536174172097807E-4 0.0 0.0 11.719953733935988 0.0 15 8.536174172097807E-4 0.0 0.0 12.04496856553861 0.0 16 8.536174172097807E-4 0.0 0.0 12.489489835550605 0.0 17 8.536174172097807E-4 0.0 0.0 13.030256469353 0.0 18 0.0010670217715122259 0.0 0.0 13.61583801755891 0.0 19 0.0010670217715122259 0.0 0.0 14.063773757239742 0.0 20 0.0010670217715122259 0.0 0.0 14.442779890480885 0.0 21 0.0010670217715122259 0.0 0.0 14.869802003440078 0.0 22 0.0010670217715122259 0.0 0.0 15.34654733095174 0.0 23 0.0010670217715122259 0.0 0.0 15.767594121990465 0.0 24 0.0010670217715122259 0.0 0.0 16.14425280733428 0.0 25 0.0010670217715122259 0.0 0.0 16.473535726022952 0.0 26 0.0010670217715122259 0.0 0.0 16.8004711968143 0.0 27 0.0010670217715122259 0.0 0.0 17.16795349492311 0.0 28 0.0010670217715122259 0.0 0.0 17.506839609555392 0.0 29 0.0010670217715122259 0.0 0.0 17.879870420876067 0.0 30 0.0010670217715122259 0.0 0.0 18.335061908603183 0.0 31 0.0010670217715122259 0.0 0.0 18.727299111811078 0.0 32 0.0010670217715122259 0.0 0.0 19.11057333213827 0.0 33 0.0010670217715122259 0.0 0.0 19.500036278740232 0.0 34 0.001280426125814671 0.0 0.0 19.877335177146954 0.0 35 0.001280426125814671 0.0 0.0 20.28963238965928 0.0 36 0.0017072348344195614 0.0 0.0 20.666504479357396 0.0 37 0.0017072348344195614 0.0 0.0 21.040815716803884 0.0 38 0.0019206391887220066 0.0 0.0 21.4785080474782 0.0 39 0.0019206391887220066 0.0 0.0 22.095033227057964 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGAC 50 2.1827873E-11 45.0 25 TTAATCG 20 7.029004E-4 45.0 20 AACGGGC 45 3.8380676E-10 45.0 4 ACGGGCC 30 2.1627402E-6 44.999996 5 CGTTTTT 3125 0.0 43.704 1 CGGCGAA 65 0.0 41.538464 31 CGGTCTA 50 1.0786607E-9 40.5 31 GTGCACG 40 3.452369E-7 39.375 1 TTGTGCG 40 3.452369E-7 39.375 1 TACGGGA 145 0.0 38.793106 4 CCATACG 65 9.094947E-12 38.076927 2 CTATGTA 30 1.1388902E-4 37.499996 30 TGCGCAG 60 1.546141E-10 37.499996 1 CGGGCGA 120 0.0 37.499996 6 TTTGACG 30 1.1388902E-4 37.499996 1 GTAGTAT 30 1.1388902E-4 37.499996 45 ATTACGG 55 2.741217E-9 36.818184 2 ACGGTCT 55 2.741217E-9 36.818184 30 GTTTTTT 3810 0.0 36.377956 2 TTACGGG 155 0.0 36.29032 3 >>END_MODULE