SRR2935545.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935545.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	337710
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3666	1.085546770898108	No Hit
GAATCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCTTC	1212	0.35888780314470997	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGC	805	0.23837019928340886	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCG	713	0.2111278907938764	No Hit
CGCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCTTCTG	698	0.20668621006188745	No Hit
GCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCTTCTGC	696	0.20609398596428888	TruSeq Adapter, Index 15 (95% over 23bp)
CGTTTCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCTT	631	0.18684670279233662	No Hit
CCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCTTCTGC	498	0.1474638003020343	TruSeq Adapter, Index 15 (95% over 23bp)
CGTTCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCTTC	490	0.14509490391164018	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCT	395	0.11696425927570993	No Hit
CTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCTTCTGCT	390	0.1154836990317136	TruSeq Adapter, Index 14 (95% over 22bp)
CGTCTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCTTCT	345	0.10215865683574664	No Hit
GAACTGTCTCTTATACACATCTGACGCCAGCAGTATCGTATGCCGTCTTCT	339	0.10038198454295104	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGCGAA	20	7.026203E-4	45.000004	31
CTCGTAG	20	7.026203E-4	45.000004	1
CGTGCTT	20	7.026203E-4	45.000004	17
TAGACGG	40	6.7902874E-9	45.000004	2
CGACCCG	20	7.026203E-4	45.000004	32
CCGTAGG	20	7.026203E-4	45.000004	44
AGGGCGT	20	7.026203E-4	45.000004	6
TACCGTA	20	7.026203E-4	45.000004	42
TACGTAG	20	7.026203E-4	45.000004	1
GTACGAG	20	7.026203E-4	45.000004	1
GCGATAT	25	3.884936E-5	45.0	9
GCCAACG	35	1.2085184E-7	45.0	1
TTTAGCG	30	2.160934E-6	44.999996	1
CGTTTTT	1985	0.0	43.52645	1
AGTGCGG	80	0.0	39.375004	2
GCTACGA	40	3.4485493E-7	39.375004	10
CCGATGA	100	0.0	38.25	18
ACCTGCG	30	1.1382157E-4	37.499996	12
GCGATGA	60	1.546141E-10	37.499996	9
GCGAGTA	30	1.1382157E-4	37.499996	45