SRR2935542.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935542.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	592387
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3137	0.5295524716106194	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTC	2625	0.44312248580741975	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGC	2127	0.3590558199285265	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCG	1974	0.33322810932717967	No Hit
GCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTCTGC	1468	0.24781097492011134	TruSeq Adapter, Index 16 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTCTG	722	0.12187978466779317	No Hit
CCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTCTGC	692	0.11681552768713695	TruSeq Adapter, Index 16 (95% over 21bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	676	0.11411459063078698	No Hit
GAACTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTCT	613	0.1034796509714089	No Hit
CTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTCTGCT	608	0.10263560814129952	TruSeq Adapter, Index 13 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTATCG	20	7.030515E-4	45.0	1
ACGTATG	20	7.030515E-4	45.0	1
ATATGCG	30	2.1637134E-6	44.999996	1
CGTTTTT	1675	0.0	41.64179	1
CACGACC	110	0.0	40.909092	27
AACACGT	105	0.0	40.714287	41
ATAGCGG	95	0.0	40.263157	2
CGGGTAT	45	1.9255822E-8	40.0	6
ACACGAC	120	0.0	39.374996	26
ACGGGAT	170	0.0	38.38235	5
CGTTAGG	30	1.13925424E-4	37.499996	2
AAGCACG	30	1.13925424E-4	37.499996	1
CACGGGA	145	0.0	37.241383	4
ACACGTG	115	0.0	37.173912	42
CCTATGC	115	0.0	37.173912	35
GCGAGAC	125	0.0	36.0	21
ACCGGTA	25	0.002106286	36.0	41
CGTATGT	25	0.002106286	36.0	17
CTTCCGT	25	0.002106286	36.0	24
CGTGCGG	100	0.0	36.0	2