##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935542.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 592387 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.159724977084238 31.0 31.0 33.0 28.0 34.0 2 31.18651320842625 31.0 31.0 34.0 28.0 34.0 3 30.979569099254373 31.0 31.0 34.0 27.0 34.0 4 34.82333001905849 35.0 35.0 37.0 32.0 37.0 5 34.81838055190273 35.0 35.0 37.0 32.0 37.0 6 34.98205396134622 36.0 35.0 37.0 32.0 37.0 7 35.45663223534615 37.0 35.0 37.0 33.0 37.0 8 35.14624392500173 37.0 35.0 37.0 32.0 37.0 9 37.04304618433558 39.0 37.0 39.0 33.0 39.0 10 36.40468477532424 38.0 35.0 39.0 32.0 39.0 11 36.604981203166176 39.0 35.0 39.0 32.0 39.0 12 36.70644190368796 39.0 35.0 39.0 33.0 39.0 13 36.730279361295906 39.0 35.0 39.0 33.0 39.0 14 37.711490967897674 40.0 37.0 41.0 33.0 41.0 15 37.91222460992561 40.0 37.0 41.0 33.0 41.0 16 37.88652350574878 40.0 37.0 41.0 33.0 41.0 17 37.788032147903316 39.0 36.0 41.0 33.0 41.0 18 37.744189187136115 39.0 36.0 41.0 33.0 41.0 19 37.633931872238925 39.0 36.0 41.0 33.0 41.0 20 37.666277281574374 39.0 36.0 41.0 33.0 41.0 21 37.61495272516109 39.0 36.0 41.0 33.0 41.0 22 37.73791963699406 39.0 36.0 41.0 33.0 41.0 23 37.773163489408105 40.0 36.0 41.0 33.0 41.0 24 37.75179063686408 40.0 36.0 41.0 33.0 41.0 25 37.3539307918641 39.0 35.0 41.0 32.0 41.0 26 37.43012253813807 39.0 35.0 41.0 33.0 41.0 27 37.48611465140187 39.0 35.0 41.0 33.0 41.0 28 37.374638538658004 39.0 35.0 41.0 33.0 41.0 29 37.35053773968706 39.0 35.0 41.0 33.0 41.0 30 37.08149739950404 39.0 35.0 41.0 32.0 41.0 31 37.05599042517814 39.0 35.0 41.0 32.0 41.0 32 37.02092382175841 39.0 35.0 41.0 32.0 41.0 33 36.98497434953839 39.0 35.0 41.0 31.0 41.0 34 36.845779870253736 39.0 35.0 41.0 31.0 41.0 35 36.81312047698548 39.0 35.0 41.0 31.0 41.0 36 36.67385678618876 39.0 35.0 41.0 31.0 41.0 37 36.721572215460505 39.0 35.0 41.0 31.0 41.0 38 36.542849522356164 39.0 35.0 41.0 31.0 41.0 39 36.43867269200708 39.0 35.0 41.0 30.0 41.0 40 36.33637132482651 39.0 35.0 41.0 30.0 41.0 41 36.17188425809479 39.0 35.0 41.0 30.0 41.0 42 36.21713508230262 39.0 35.0 41.0 30.0 41.0 43 36.18737413211296 39.0 35.0 41.0 30.0 41.0 44 36.186273500262494 39.0 35.0 41.0 30.0 41.0 45 36.133134251764474 39.0 35.0 40.0 30.0 41.0 46 36.01969489539777 38.0 35.0 40.0 30.0 41.0 47 35.97685972176972 38.0 35.0 40.0 30.0 41.0 48 35.89711455518099 38.0 35.0 40.0 30.0 41.0 49 35.87627007344861 38.0 35.0 40.0 30.0 41.0 50 35.75318330753376 38.0 35.0 40.0 29.0 41.0 51 34.58300401595579 37.0 33.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 20.0 9 47.0 10 65.0 11 28.0 12 38.0 13 28.0 14 47.0 15 59.0 16 104.0 17 146.0 18 235.0 19 414.0 20 736.0 21 1230.0 22 1875.0 23 2624.0 24 3520.0 25 4796.0 26 5865.0 27 6805.0 28 7391.0 29 8097.0 30 10353.0 31 12641.0 32 17054.0 33 24374.0 34 43540.0 35 44863.0 36 49814.0 37 74646.0 38 126395.0 39 144520.0 40 16.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.53068686517428 20.084167951018507 22.70525855564015 12.679886628167058 2 34.664501415459824 24.18267112546359 23.834756670892506 17.318070788184077 3 32.880026064042596 24.21491356157377 26.395076191746274 16.509984182637364 4 28.818154348424258 24.691291334887495 26.99738515531232 19.493169161375924 5 25.824165621460292 29.471274690362886 24.560633504786566 20.143926183390253 6 25.142516631863966 34.76426727797875 25.176784770766407 14.916431319390872 7 77.17944519376691 6.278159378919524 11.562373921102251 4.980021506211312 8 77.62763193655499 7.363092032742109 9.899609545786792 5.109666484916111 9 71.68540160401899 7.792709833267779 12.014443260908832 8.507445301804395 10 41.31252036253328 26.032475391931285 18.07787814384853 14.577126101686904 11 31.44633491281882 24.931674732902646 24.82937674189339 18.792613612385146 12 28.31780575873542 22.329490687675456 28.899520077246798 20.453183476342325 13 26.5233707019229 22.730579840543427 30.625925281952508 20.120124175581168 14 20.80430529366782 27.602901481632784 29.918786198886878 21.674007025812518 15 19.843615744437333 25.008651439008624 34.144233414980405 21.003499401573634 16 23.694307943962308 25.164461745446808 30.037627429366275 21.103602881224603 17 24.115485316186884 24.69990057175461 28.673823024475553 22.510791087582948 18 24.508302849319787 24.835453850270177 29.12386666148987 21.532376638920166 19 25.148593740240756 25.99820725302885 26.618241116027193 22.234957890703207 20 26.49180350007681 26.22424192293214 27.820664531801004 19.463290045190053 21 25.66177178094725 26.711423444471265 28.214663724896056 19.412141049685424 22 23.928107807902606 24.44314274283534 28.766498927221562 22.86225052204049 23 23.978581569143145 25.76406977195651 28.906441228453694 21.35090743044665 24 23.658182910833627 24.775695617898435 28.498937350076893 23.067184121191044 25 24.152454392145675 26.653015680627696 26.60996949629212 22.58456043093451 26 22.324764047826843 25.70194821966046 27.756010851014622 24.217276881498076 27 23.417293087120413 25.215948358083484 28.708259971944017 22.658498582852086 28 21.13128748605219 26.444368293024663 28.741177642318284 23.683166578604865 29 24.208498836064937 25.571796815257592 27.911145923188723 22.30855842548874 30 24.491253184151578 24.142494686750386 28.453527845817007 22.91272428328103 31 24.254921191720953 24.77738370355865 27.22595195370594 23.741743151014454 32 26.46952076936192 25.103353044546893 27.26866052090947 21.158465665181716 33 24.918170047620897 24.119367913205387 27.964658238617663 22.997803800556056 34 23.650755333928664 24.375281699294547 29.55179637635532 22.42216659042146 35 23.12609831073268 25.019792804366066 28.75535756186412 23.098751323037135 36 23.464221868474493 26.82520041797001 28.11422262811304 21.596355085442458 37 23.478739405152375 26.05155075989176 27.75010255120386 22.71960728375201 38 22.7388514602785 26.277923046927093 28.373681394088663 22.609544098705744 39 24.218964967158293 24.06653083204054 27.90793856043431 23.806565640366856 40 24.1727114200683 22.82899523453418 30.251001456817928 22.747291888579593 41 20.494879192149725 24.223522798440882 29.91844858175483 25.36314942765456 42 22.480067928566967 24.761346889786576 29.591804006502503 23.166781175143953 43 22.653771943003477 23.75119643071168 28.91589450815092 24.679137118133923 44 22.657316922889937 24.130846895694873 28.476148193663942 24.735687987751252 45 22.86512026766286 22.9495245506738 27.881266807002852 26.304088374660484 46 23.089635660471956 24.92036455897918 27.901861452057524 24.08813832849134 47 21.782719742330606 24.314341806960652 30.253027159610184 23.649911291098554 48 21.210121086384408 24.28260579654854 30.018889678537846 24.488383438529205 49 22.61190741863005 23.705955735017817 30.570724880863352 23.111411965488777 50 21.66421612898325 23.656832442305454 30.24576839127125 24.433183037440052 51 21.416236345497115 23.087947574811736 28.612207897877568 26.883608181813578 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 259.0 1 555.0 2 851.0 3 3146.0 4 5441.0 5 3605.0 6 1769.0 7 1754.0 8 1739.0 9 1680.0 10 1621.0 11 1615.0 12 1609.0 13 1601.0 14 1593.0 15 1637.0 16 1681.0 17 1636.5 18 1592.0 19 1596.0 20 1600.0 21 1698.0 22 1796.0 23 2086.5 24 2377.0 25 2834.0 26 3976.5 27 4662.0 28 5496.0 29 6330.0 30 7115.0 31 7900.0 32 9766.0 33 11632.0 34 13106.0 35 14580.0 36 15946.5 37 17313.0 38 18942.5 39 20572.0 40 22252.5 41 23933.0 42 25357.0 43 26781.0 44 30213.5 45 33646.0 46 42103.0 47 50560.0 48 50333.5 49 50107.0 50 50270.5 51 50434.0 52 45963.5 53 41493.0 54 39349.0 55 37205.0 56 35891.0 57 34577.0 58 32903.5 59 31230.0 60 30097.0 61 28964.0 62 26657.0 63 24350.0 64 20678.0 65 17006.0 66 14238.0 67 11470.0 68 9721.0 69 7972.0 70 6340.5 71 4709.0 72 4081.0 73 3453.0 74 2729.0 75 1616.0 76 1227.0 77 882.0 78 537.0 79 439.0 80 341.0 81 219.5 82 98.0 83 68.5 84 39.0 85 32.0 86 25.0 87 17.5 88 10.0 89 7.5 90 5.0 91 3.0 92 1.0 93 0.5 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 592387.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.88163502092391 #Duplication Level Percentage of deduplicated Percentage of total 1 71.87229781545128 24.35150962698267 2 8.772424317049584 5.944481579179034 3 3.4176958799798576 3.473913732539787 4 2.0415184841867036 2.7667993667873487 5 1.5469427948179157 2.6206475586134306 6 1.3231248869549765 2.689778070414584 7 1.130807043577758 2.681951407071412 8 0.9725885847531729 2.6362313163299143 9 0.8997553609238031 2.7436664472245966 >10 7.936544064365663 44.42852801279669 >50 0.05097296819812516 1.1772992146474193 >100 0.03028097120672777 1.9814877704148712 >500 0.002523414267227314 0.5661637908045943 >1k 0.002523414267227314 1.937542106193554 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3137 0.5295524716106194 No Hit GAATCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTC 2625 0.44312248580741975 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGC 2127 0.3590558199285265 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCG 1974 0.33322810932717967 No Hit GCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTCTGC 1468 0.24781097492011134 TruSeq Adapter, Index 16 (95% over 21bp) CGCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTCTG 722 0.12187978466779317 No Hit CCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTCTGC 692 0.11681552768713695 TruSeq Adapter, Index 16 (95% over 21bp) GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 676 0.11411459063078698 No Hit GAACTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTCT 613 0.1034796509714089 No Hit CTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTCTGCT 608 0.10263560814129952 TruSeq Adapter, Index 13 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.376171320437484E-4 0.0 0.0 0.10634939659378076 0.0 2 3.376171320437484E-4 0.0 0.0 0.5705729531539349 0.0 3 3.376171320437484E-4 0.0 0.0 0.8362776360723648 0.0 4 3.376171320437484E-4 0.0 0.0 1.2508714742220879 0.0 5 5.064256980656227E-4 0.0 0.0 2.504275076934504 0.0 6 5.064256980656227E-4 0.0 0.0 3.248720853090969 0.0 7 5.064256980656227E-4 0.0 0.0 3.8614959477503725 0.0 8 5.064256980656227E-4 0.0 0.0 4.711109460538466 0.0 9 5.064256980656227E-4 0.0 0.0 5.076411197409802 0.0 10 5.064256980656227E-4 0.0 0.0 6.070018417014553 0.0 11 5.064256980656227E-4 0.0 0.0 6.9964398273425985 0.0 12 5.064256980656227E-4 0.0 0.0 8.080359629769053 0.0 13 5.064256980656227E-4 0.0 0.0 8.420171273171086 0.0 14 5.064256980656227E-4 0.0 0.0 8.589148647758982 0.0 15 5.064256980656227E-4 0.0 0.0 8.885238872561349 0.0 16 5.064256980656227E-4 0.0 0.0 9.371407542704347 0.0 17 5.064256980656227E-4 0.0 0.0 9.903829759937338 0.0 18 5.064256980656227E-4 0.0 0.0 10.488245015505067 0.0 19 5.064256980656227E-4 0.0 0.0 10.915161878974386 0.0 20 5.064256980656227E-4 0.0 0.0 11.277087444525286 0.0 21 5.064256980656227E-4 0.0 0.0 11.695901496825554 0.0 22 6.752342640874968E-4 0.0 0.0 12.176668292855853 0.0 23 6.752342640874968E-4 0.0 0.0 12.620803630059404 0.0 24 6.752342640874968E-4 0.0 0.0 12.996402689458074 0.0 25 6.752342640874968E-4 0.0 0.0 13.340265738444632 0.0 26 6.752342640874968E-4 0.0 0.0 13.68412878743119 0.0 27 6.752342640874968E-4 0.0 0.0 14.030692773474097 0.0 28 6.752342640874968E-4 0.0 0.0 14.382827442195726 0.0 29 6.752342640874968E-4 0.0 0.0 14.726521682616262 0.0 30 6.752342640874968E-4 0.0 0.0 15.189394770648242 0.0 31 8.44042830109371E-4 0.0 0.0 15.553683656123447 0.0 32 8.44042830109371E-4 0.0 0.0 15.937385526691166 0.0 33 8.44042830109371E-4 0.0 0.0 16.313828628919946 0.0 34 8.44042830109371E-4 0.0 0.0 16.684194622771937 0.0 35 8.44042830109371E-4 0.0 0.0 17.079881901527212 0.0 36 8.44042830109371E-4 0.0 0.0 17.4517671724734 0.0 37 8.44042830109371E-4 0.0 0.0 17.836650703003272 0.0 38 8.44042830109371E-4 0.0 0.0 18.25343905251128 0.0 39 8.44042830109371E-4 0.0 0.0 18.79463931517741 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCG 20 7.030515E-4 45.0 1 ACGTATG 20 7.030515E-4 45.0 1 ATATGCG 30 2.1637134E-6 44.999996 1 CGTTTTT 1675 0.0 41.64179 1 CACGACC 110 0.0 40.909092 27 AACACGT 105 0.0 40.714287 41 ATAGCGG 95 0.0 40.263157 2 CGGGTAT 45 1.9255822E-8 40.0 6 ACACGAC 120 0.0 39.374996 26 ACGGGAT 170 0.0 38.38235 5 CGTTAGG 30 1.13925424E-4 37.499996 2 AAGCACG 30 1.13925424E-4 37.499996 1 CACGGGA 145 0.0 37.241383 4 ACACGTG 115 0.0 37.173912 42 CCTATGC 115 0.0 37.173912 35 GCGAGAC 125 0.0 36.0 21 ACCGGTA 25 0.002106286 36.0 41 CGTATGT 25 0.002106286 36.0 17 CTTCCGT 25 0.002106286 36.0 24 CGTGCGG 100 0.0 36.0 2 >>END_MODULE