SRR2935541.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935541.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	441957
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3607	0.8161427469188178	No Hit
GCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCTTCTGC	1409	0.3188092959269793	No Hit
GAATCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCTTC	1359	0.30749597811551804	No Hit
CCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCTTCTGC	1318	0.29821905751011973	No Hit
CGCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCTTCTG	1229	0.27808135180571864	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCTTC	1162	0.2629215059383605	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCTT	1153	0.2608851087322975	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCG	913	0.20658118323728328	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGC	909	0.20567611781236636	No Hit
CTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCTTCTGCT	820	0.18553841210796523	TruSeq Adapter, Index 13 (95% over 22bp)
CGTTTTCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCT	602	0.136212346449994	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCC	552	0.12489902863853271	No Hit
CGTCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCTTCT	529	0.11969490244526051	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGCGAA	20	7.0285704E-4	45.0	31
AAATCGG	20	7.0285704E-4	45.0	2
GTCGAAT	20	7.0285704E-4	45.0	30
GAGTACG	25	3.886895E-5	45.0	1
GCGCCAG	20	7.0285704E-4	45.0	1
ACGTGCG	20	7.0285704E-4	45.0	1
ATGCGAG	20	7.0285704E-4	45.0	1
CGATGCG	25	3.886895E-5	45.0	10
TCGAATT	20	7.0285704E-4	45.0	31
CTAGCGG	50	2.1827873E-11	45.0	2
CGGACGG	25	3.886895E-5	45.0	2
TCGTGCG	30	2.1624583E-6	44.999996	1
GCTAGCG	30	2.1624583E-6	44.999996	1
TTTGCGG	60	0.0	44.999996	2
CGTTTTT	2230	0.0	43.58744	1
CGTGCGG	60	3.6379788E-12	41.249996	2
TACGGGA	210	0.0	40.714287	4
CGCGAGG	50	1.0786607E-9	40.5	2
CGTTTCT	140	0.0	40.17857	1
ACGGGAC	185	0.0	40.135136	5