##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935541.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 441957 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.16495043635467 31.0 31.0 33.0 28.0 34.0 2 31.16509298415909 31.0 31.0 34.0 28.0 34.0 3 30.95232341607894 31.0 31.0 34.0 27.0 34.0 4 34.72583758148417 35.0 35.0 37.0 32.0 37.0 5 34.81052455329365 35.0 35.0 37.0 32.0 37.0 6 35.019861660749804 36.0 35.0 37.0 32.0 37.0 7 35.451982885212814 37.0 35.0 37.0 33.0 37.0 8 35.27978966279525 37.0 35.0 37.0 33.0 37.0 9 37.22444038673446 39.0 37.0 39.0 34.0 39.0 10 36.43951334632102 38.0 35.0 39.0 32.0 39.0 11 36.72813871032702 39.0 37.0 39.0 32.0 39.0 12 36.93631733403929 39.0 37.0 39.0 33.0 39.0 13 37.05574750484776 39.0 37.0 39.0 33.0 39.0 14 38.127252198743314 40.0 37.0 41.0 33.0 41.0 15 38.31799473704456 40.0 38.0 41.0 34.0 41.0 16 38.24885000124446 40.0 37.0 41.0 34.0 41.0 17 38.171435230124196 40.0 37.0 41.0 34.0 41.0 18 38.110718916093646 39.0 37.0 41.0 34.0 41.0 19 37.92465104071211 39.0 37.0 41.0 34.0 41.0 20 37.96757150582523 39.0 37.0 41.0 34.0 41.0 21 37.9243455811312 39.0 36.0 41.0 34.0 41.0 22 38.04489124507588 40.0 37.0 41.0 34.0 41.0 23 38.106157386352066 40.0 37.0 41.0 34.0 41.0 24 38.07796007303878 40.0 37.0 41.0 34.0 41.0 25 37.661283790051975 39.0 36.0 41.0 33.0 41.0 26 37.77207284871605 40.0 36.0 41.0 33.0 41.0 27 37.829254882262305 40.0 36.0 41.0 33.0 41.0 28 37.72518367171467 40.0 36.0 41.0 33.0 41.0 29 37.690997087952 40.0 36.0 41.0 33.0 41.0 30 37.383804306753824 39.0 36.0 41.0 33.0 41.0 31 37.29568487432035 39.0 36.0 41.0 32.0 41.0 32 37.23395036168677 39.0 36.0 41.0 32.0 41.0 33 37.118676703842226 40.0 36.0 41.0 31.0 41.0 34 36.97522835932003 40.0 36.0 41.0 31.0 41.0 35 36.953038417764624 40.0 36.0 41.0 31.0 41.0 36 36.788884438983885 40.0 36.0 41.0 31.0 41.0 37 36.77010659408042 40.0 36.0 41.0 31.0 41.0 38 36.63815710578179 39.0 35.0 41.0 30.0 41.0 39 36.60216039116928 39.0 35.0 41.0 30.0 41.0 40 36.5230961383121 39.0 35.0 41.0 30.0 41.0 41 36.40454840629292 39.0 35.0 41.0 30.0 41.0 42 36.43714207490774 39.0 35.0 41.0 30.0 41.0 43 36.39244541889822 39.0 35.0 41.0 30.0 41.0 44 36.38389255063275 39.0 35.0 41.0 30.0 41.0 45 36.35060424430431 39.0 35.0 41.0 30.0 41.0 46 36.244618820382975 39.0 35.0 41.0 29.0 41.0 47 36.22444038673446 39.0 35.0 41.0 29.0 41.0 48 36.15677995823123 39.0 35.0 41.0 29.0 41.0 49 36.14759580683189 39.0 35.0 41.0 29.0 41.0 50 36.040454161830226 39.0 35.0 41.0 29.0 41.0 51 34.892233859855146 38.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 6 1.0 7 0.0 8 8.0 9 26.0 10 27.0 11 21.0 12 15.0 13 9.0 14 18.0 15 20.0 16 44.0 17 68.0 18 128.0 19 270.0 20 466.0 21 736.0 22 1143.0 23 1674.0 24 2651.0 25 4075.0 26 5258.0 27 5503.0 28 5580.0 29 5794.0 30 6770.0 31 8397.0 32 10761.0 33 14860.0 34 24624.0 35 30681.0 36 35618.0 37 56034.0 38 102758.0 39 117903.0 40 16.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.14724735664329 21.731525917679775 24.436087673687712 14.685139051989221 2 35.28895345022253 23.704794810354855 24.66190149720448 16.344350242218134 3 30.897802274881947 22.935262932819256 30.236878248336374 15.93005654396242 4 27.09630122387472 24.95152243317789 29.740223596413223 18.211952746534166 5 24.23425808393124 29.883223933550095 27.380718033654862 18.501799948863802 6 23.345257570306615 34.065757528447335 27.869453363109987 14.719531538136064 7 77.30955726462076 5.20276859513482 12.683586864785488 4.804087275458925 8 78.37300913889813 5.119502576042466 11.587552635211118 4.919935649848289 9 72.74644365854597 7.03009568804205 13.55969019610505 6.663770457306932 10 34.26690831913512 30.128270397346345 21.59259837495503 14.012222908563505 11 24.245118869030243 25.305855547032856 31.13289301900411 19.316132564932786 12 22.32615390185018 22.473000767042947 34.97964734125718 20.22119798984969 13 22.189489022687727 23.77652124527952 36.226148697723985 17.80784103430877 14 19.185350611032295 27.857913778942294 33.04755892541582 19.90917668460959 15 18.19068370904862 27.05331061619117 36.36507624044873 18.39092943431148 16 20.457872598465464 26.490586188249083 33.23219227209887 19.819348941186586 17 20.699525066918277 25.94777319965517 31.558273768715058 21.7944279647115 18 21.460006290204703 25.974246363333993 32.76336838199192 19.802378964469394 19 20.863115642472003 28.164504691632896 30.822908110970072 20.14947155492503 20 21.932450442011326 27.10784080804241 31.416631029715557 19.543077720230702 21 21.585584117911925 27.628027161013403 31.983428252069775 18.802960469004905 22 20.609471057139043 24.90988942363171 31.546507918191136 22.93413160103811 23 19.11136151254534 27.58051122620526 31.58135293705044 21.72677432419896 24 20.43434089741762 25.570134651108596 32.33866643134966 21.65685802012413 25 19.800342567263332 27.748174596171122 30.435540109105634 22.01594272745991 26 19.79762737098858 27.980323877662304 30.70728600293694 21.514762748412174 27 21.004079582402813 27.82171116194562 30.56858472656842 20.605624529083148 28 19.126521358412695 27.213054663689 32.00062449514319 21.65979948275511 29 20.874655226639696 25.760650923053603 31.04578047185586 22.318913378450844 30 21.011546372158378 27.22323664971932 30.640989960561775 21.124227017560532 31 20.272334186357497 27.965842830863636 28.24301911724444 23.51880386553443 32 20.482988164006905 29.98051846672866 27.937107003622526 21.599386365641905 33 19.410033102767915 28.228764336801998 29.093554350310097 23.26764821011999 34 19.176299956783126 27.068922994770983 29.305113393384424 24.449663655061464 35 19.553712238973475 29.012550994780035 28.13463753261064 23.29909923363585 36 20.48796602384395 28.29551291188962 28.10793810257559 23.108582961690843 37 18.76607905293954 29.54110920293151 28.940598293499143 22.752213450629814 38 18.305627018013066 29.24854680432712 28.583097450656965 23.862728727002853 39 20.134990508126357 26.823423998262275 29.154193733779532 23.88739175983184 40 20.903164787524577 26.165893967060143 30.409293211783044 22.52164803363223 41 18.863373586118108 27.262606995703205 28.813662867654543 25.060356550524148 42 19.939722642700534 27.598160001991147 29.058030532382112 23.404086822926214 43 20.65155659939768 26.62815613283645 29.019565251823142 23.700722015942727 44 20.23047491045509 26.57724620268488 28.650751091169504 24.54152779569053 45 20.17526591953516 25.676479838536327 28.957115737503873 25.191138504424636 46 21.60097023013551 26.590143384989943 28.54779989908521 23.261086485789342 47 19.09280767133454 26.700787633186035 30.757969666732283 23.44843502874714 48 19.15163692395414 26.27223915448788 29.52911708605136 25.047006835506625 49 19.796043506494975 24.736795661116354 31.29354213192686 24.17361870046181 50 19.061356647818677 24.701045576832133 31.33404380969189 24.903553965657295 51 18.965872245489944 24.162531649006578 29.24175881364024 27.629837291863236 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 160.0 1 285.0 2 410.0 3 3099.5 4 5789.0 5 3938.5 6 2088.0 7 2080.5 8 2073.0 9 2077.0 10 2081.0 11 2022.0 12 1963.0 13 1910.0 14 1857.0 15 1775.5 16 1694.0 17 1689.5 18 1685.0 19 1706.0 20 1727.0 21 1782.5 22 1838.0 23 1955.5 24 2073.0 25 2550.5 26 3722.0 27 4416.0 28 4971.0 29 5526.0 30 6478.5 31 7431.0 32 8909.0 33 10387.0 34 11940.5 35 13494.0 36 14584.0 37 15674.0 38 17501.5 39 19329.0 40 20729.5 41 22130.0 42 25090.0 43 28050.0 44 30466.5 45 32883.0 46 40046.5 47 47210.0 48 48336.5 49 49463.0 50 47315.0 51 45167.0 52 37705.0 53 30243.0 54 26854.0 55 23465.0 56 19956.5 57 16448.0 58 14797.0 59 13146.0 60 11707.0 61 10268.0 62 8665.0 63 7062.0 64 6091.0 65 5120.0 66 3956.0 67 2792.0 68 2161.5 69 1531.0 70 1297.5 71 1064.0 72 816.0 73 568.0 74 432.0 75 247.0 76 198.0 77 133.5 78 69.0 79 49.5 80 30.0 81 25.0 82 20.0 83 13.5 84 7.0 85 5.0 86 3.0 87 2.0 88 1.0 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 441957.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.58023396638824 #Duplication Level Percentage of deduplicated Percentage of total 1 74.33790800407914 32.39663423389614 2 9.72219711247426 8.473912496579448 3 3.926868169445229 5.134015007387574 4 2.2498921981547695 3.922033135789456 5 1.5982935154828155 3.4827002675851126 6 1.274242430767652 3.331906995765214 7 1.027499191219756 3.134505860754216 8 0.8588015592272572 2.994141830545832 9 0.7466024493297545 2.9283398479502303 >10 4.192331859682243 28.068525136726088 >50 0.04392427881216905 1.3550016245087095 >100 0.014641426270721515 1.2319439593160997 >500 0.003137448486583182 0.985600744365914 >1k 0.003660356567680379 2.5607388588300064 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3607 0.8161427469188178 No Hit GCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCTTCTGC 1409 0.3188092959269793 No Hit GAATCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCTTC 1359 0.30749597811551804 No Hit CCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCTTCTGC 1318 0.29821905751011973 No Hit CGCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCTTCTG 1229 0.27808135180571864 No Hit CGTTCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCTTC 1162 0.2629215059383605 No Hit CGTTTCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCTT 1153 0.2608851087322975 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCG 913 0.20658118323728328 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGC 909 0.20567611781236636 No Hit CTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCTTCTGCT 820 0.18553841210796523 TruSeq Adapter, Index 13 (95% over 22bp) CGTTTTCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCT 602 0.136212346449994 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCC 552 0.12489902863853271 No Hit CGTCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCTTCT 529 0.11969490244526051 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 6.787990686876777E-4 0.0 0.0 0.1930052018635297 0.0 2 6.787990686876777E-4 0.0 0.0 1.0019074253830125 0.0 3 6.787990686876777E-4 0.0 0.0 1.5496982738139684 0.0 4 6.787990686876777E-4 0.0 0.0 2.1705731553069643 0.0 5 6.787990686876777E-4 0.0 0.0 3.913729163696921 0.0 6 6.787990686876777E-4 0.0 0.0 5.1844410202802536 0.0 7 6.787990686876777E-4 0.0 0.0 6.206259885011438 0.0 8 6.787990686876777E-4 0.0 0.0 7.641467382573418 0.0 9 6.787990686876777E-4 0.0 0.0 8.220256721807777 0.0 10 6.787990686876777E-4 0.0 0.0 9.526039863606641 0.0 11 6.787990686876777E-4 0.0 0.0 11.074606805639462 0.0 12 6.787990686876777E-4 0.0 0.0 12.51614976117586 0.0 13 6.787990686876777E-4 0.0 0.0 13.076611525555654 0.0 14 6.787990686876777E-4 0.0 0.0 13.341795695056307 0.0 15 6.787990686876777E-4 0.0 0.0 13.700880402392087 0.0 16 6.787990686876777E-4 0.0 0.0 14.424706475969382 0.0 17 6.787990686876777E-4 0.0 0.0 15.416658181678308 0.0 18 6.787990686876777E-4 0.0 0.0 16.435309317422284 0.0 19 6.787990686876777E-4 0.0 0.0 17.08492002615639 0.0 20 6.787990686876777E-4 0.0 0.0 17.670723622433858 0.0 21 6.787990686876777E-4 0.0 0.0 18.389798102530335 0.0 22 6.787990686876777E-4 0.0 0.0 19.196437662487526 0.0 23 6.787990686876777E-4 0.0 0.0 19.994026568195547 0.0 24 6.787990686876777E-4 0.0 0.0 20.600872935602332 0.0 25 6.787990686876777E-4 0.0 0.0 21.132146340028555 0.0 26 6.787990686876777E-4 0.0 0.0 21.653237758424464 0.0 27 6.787990686876777E-4 0.0 0.0 22.180664634794788 0.0 28 6.787990686876777E-4 0.0 0.0 22.725287754238533 0.0 29 6.787990686876777E-4 0.0 0.0 23.264933013845237 0.0 30 6.787990686876777E-4 0.0 0.0 23.90752946553624 0.0 31 6.787990686876777E-4 0.0 0.0 24.510076772174667 0.0 32 6.787990686876777E-4 0.0 0.0 25.0847933169969 0.0 33 6.787990686876777E-4 0.0 0.0 25.64729147858276 0.0 34 9.050654249169037E-4 0.0 0.0 26.195534859726173 0.0 35 9.050654249169037E-4 0.0 0.0 26.75192382969384 0.0 36 0.0011313317811461295 0.0 0.0 27.312385594073632 0.0 37 0.0011313317811461295 0.0 0.0 27.86538056869786 0.0 38 0.0011313317811461295 0.0 0.0 28.417470477897172 0.0 39 0.0011313317811461295 0.0 0.0 28.979742373126797 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGCGAA 20 7.0285704E-4 45.0 31 AAATCGG 20 7.0285704E-4 45.0 2 GTCGAAT 20 7.0285704E-4 45.0 30 GAGTACG 25 3.886895E-5 45.0 1 GCGCCAG 20 7.0285704E-4 45.0 1 ACGTGCG 20 7.0285704E-4 45.0 1 ATGCGAG 20 7.0285704E-4 45.0 1 CGATGCG 25 3.886895E-5 45.0 10 TCGAATT 20 7.0285704E-4 45.0 31 CTAGCGG 50 2.1827873E-11 45.0 2 CGGACGG 25 3.886895E-5 45.0 2 TCGTGCG 30 2.1624583E-6 44.999996 1 GCTAGCG 30 2.1624583E-6 44.999996 1 TTTGCGG 60 0.0 44.999996 2 CGTTTTT 2230 0.0 43.58744 1 CGTGCGG 60 3.6379788E-12 41.249996 2 TACGGGA 210 0.0 40.714287 4 CGCGAGG 50 1.0786607E-9 40.5 2 CGTTTCT 140 0.0 40.17857 1 ACGGGAC 185 0.0 40.135136 5 >>END_MODULE