SRR2935540.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935540.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	670795
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10590	1.5787237531585656	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTC	3375	0.5031343405958602	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTT	2861	0.4265088439836313	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTC	2198	0.3276708979643557	No Hit
CGCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTG	1941	0.28935814965824136	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGC	1912	0.2850349212501584	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCG	1861	0.2774320023255987	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCT	1745	0.26013908869326696	No Hit
GCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGC	1533	0.228534798261764	No Hit
CGTCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCT	1251	0.18649512891419884	No Hit
CCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGC	1157	0.17248190579834374	No Hit
CTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGCT	881	0.13133669750072674	No Hit
GAACTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCT	874	0.13029315960912052	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCC	772	0.1150873217600012	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTC	748	0.11150947756020842	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGTACG	30	2.1641445E-6	45.000004	1
CTATGCG	20	7.031183E-4	45.0	1
TCGTTGA	25	3.8890634E-5	45.0	24
TCTTGCG	20	7.031183E-4	45.0	1
ACTACCG	20	7.031183E-4	45.0	1
TATTACG	25	3.8890634E-5	45.0	1
TTAACGG	35	1.2109194E-7	45.0	2
GGACCGT	20	7.031183E-4	45.0	8
AATAGCG	50	2.1827873E-11	45.0	1
CGTTTTT	5370	0.0	43.868713	1
CGTTTTC	195	0.0	43.846153	1
TACGAAT	80	0.0	42.1875	12
CGAGACA	65	0.0	41.53846	22
ACGATAG	50	1.0804797E-9	40.5	1
CGAATAT	90	0.0	40.0	14
CGGTCTA	90	0.0	40.0	31
CTACGAA	85	0.0	39.705883	11
CGTTTCT	320	0.0	38.671875	1
ATTACGG	70	0.0	38.571426	2
TGTAACG	35	6.2443996E-6	38.571426	1