Basic Statistics
Measure | Value |
---|---|
Filename | SRR2935538.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 393906 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGC | 8306 | 2.1086249003569377 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTC | 8217 | 2.086030677369728 | No Hit |
GAATGATACCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCG | 7133 | 1.8108381187389884 | No Hit |
GCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGC | 3504 | 0.8895523297436444 | No Hit |
GAATGACTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCT | 1663 | 0.4221819418846121 | No Hit |
GAACTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCT | 1587 | 0.4028879986595787 | No Hit |
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCAGTACGTT | 1469 | 0.3729316131259742 | No Hit |
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCAGTACGTTCGTA | 1392 | 0.3533838022269272 | No Hit |
GAATGATCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTC | 1265 | 0.32114260762720037 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1061 | 0.2693536021284266 | No Hit |
CCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGC | 907 | 0.23025798033033262 | No Hit |
CTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGCT | 876 | 0.2223880824359111 | Illumina Single End Adapter 2 (95% over 21bp) |
GAATGCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTT | 709 | 0.17999218087564037 | No Hit |
TCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGC | 519 | 0.1317573228130569 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGATGC | 60 | 0.0 | 45.000004 | 9 |
CTAGCGG | 30 | 2.1618544E-6 | 45.000004 | 2 |
CGGCGAA | 140 | 0.0 | 45.0 | 31 |
ACCGGGT | 20 | 7.027634E-4 | 45.0 | 4 |
CCGATCG | 40 | 6.7957444E-9 | 45.0 | 40 |
GGCCGAT | 20 | 7.027634E-4 | 45.0 | 8 |
CCGGAGC | 20 | 7.027634E-4 | 45.0 | 14 |
TACGGAG | 20 | 7.027634E-4 | 45.0 | 29 |
CTAACGG | 20 | 7.027634E-4 | 45.0 | 2 |
CGCTCGA | 35 | 1.2092096E-7 | 45.0 | 41 |
TCTACGG | 20 | 7.027634E-4 | 45.0 | 2 |
CGCAGAT | 20 | 7.027634E-4 | 45.0 | 28 |
GTATACG | 20 | 7.027634E-4 | 45.0 | 1 |
CTCGAAT | 70 | 0.0 | 45.0 | 43 |
CGATCGA | 90 | 0.0 | 45.0 | 41 |
TACGGCT | 965 | 0.0 | 42.668392 | 7 |
CGATGAA | 885 | 0.0 | 42.457626 | 19 |
ACGGCTG | 980 | 0.0 | 42.015305 | 8 |
CCGATGA | 870 | 0.0 | 41.896553 | 18 |
TTAGCGG | 65 | 0.0 | 41.53846 | 2 |