FastQCFastQC Report
Sat 14 Jan 2017
SRR2935538.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2935538.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences393906
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGC83062.1086249003569377No Hit
GAATCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTC82172.086030677369728No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCG71331.8108381187389884No Hit
GCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGC35040.8895523297436444No Hit
GAATGACTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCT16630.4221819418846121No Hit
GAACTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCT15870.4028879986595787No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCAGTACGTT14690.3729316131259742No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCAGTACGTTCGTA13920.3533838022269272No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTC12650.32114260762720037No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10610.2693536021284266No Hit
CCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGC9070.23025798033033262No Hit
CTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGCT8760.2223880824359111Illumina Single End Adapter 2 (95% over 21bp)
GAATGCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTT7090.17999218087564037No Hit
TCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGC5190.1317573228130569No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGATGC600.045.0000049
CTAGCGG302.1618544E-645.0000042
CGGCGAA1400.045.031
ACCGGGT207.027634E-445.04
CCGATCG406.7957444E-945.040
GGCCGAT207.027634E-445.08
CCGGAGC207.027634E-445.014
TACGGAG207.027634E-445.029
CTAACGG207.027634E-445.02
CGCTCGA351.2092096E-745.041
TCTACGG207.027634E-445.02
CGCAGAT207.027634E-445.028
GTATACG207.027634E-445.01
CTCGAAT700.045.043
CGATCGA900.045.041
TACGGCT9650.042.6683927
CGATGAA8850.042.45762619
ACGGCTG9800.042.0153058
CCGATGA8700.041.89655318
TTAGCGG650.041.538462