##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935535.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 456406 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.162765169607763 31.0 31.0 33.0 28.0 34.0 2 31.19575772448215 31.0 31.0 34.0 28.0 34.0 3 30.98746072575733 31.0 31.0 34.0 27.0 34.0 4 34.787693413320596 35.0 35.0 37.0 32.0 37.0 5 34.826100007449504 35.0 35.0 37.0 33.0 37.0 6 35.02079289054044 36.0 35.0 37.0 32.0 37.0 7 35.49285285469516 37.0 35.0 37.0 33.0 37.0 8 35.30839428053093 37.0 35.0 37.0 33.0 37.0 9 37.27622774459582 39.0 37.0 39.0 34.0 39.0 10 36.42761707777724 38.0 35.0 39.0 32.0 39.0 11 36.67305644535786 39.0 35.0 39.0 32.0 39.0 12 36.82859997458403 39.0 37.0 39.0 33.0 39.0 13 36.93929089451059 39.0 37.0 39.0 33.0 39.0 14 37.98595548700061 40.0 37.0 41.0 33.0 41.0 15 38.179993251622456 40.0 37.0 41.0 33.0 41.0 16 38.092713505081 40.0 37.0 41.0 33.0 41.0 17 38.026415077803534 40.0 37.0 41.0 33.0 41.0 18 37.98290337988545 39.0 37.0 41.0 33.0 41.0 19 37.8116019508946 39.0 37.0 41.0 33.0 41.0 20 37.91508437662958 39.0 36.0 41.0 34.0 41.0 21 37.82415875339062 39.0 36.0 41.0 33.0 41.0 22 37.92933265557421 40.0 36.0 41.0 33.0 41.0 23 37.97418088281048 40.0 36.0 41.0 34.0 41.0 24 37.95991069354916 40.0 36.0 41.0 34.0 41.0 25 37.4998575829415 39.0 36.0 41.0 33.0 41.0 26 37.64132592472492 39.0 36.0 41.0 33.0 41.0 27 37.72393220071603 40.0 36.0 41.0 33.0 41.0 28 37.61118390205212 40.0 36.0 41.0 33.0 41.0 29 37.60133302366752 40.0 36.0 41.0 33.0 41.0 30 37.31069048172022 39.0 36.0 41.0 32.0 41.0 31 37.27605465309396 39.0 36.0 41.0 32.0 41.0 32 37.23064113968703 39.0 36.0 41.0 32.0 41.0 33 37.17872464428601 40.0 36.0 41.0 32.0 41.0 34 37.073894734074486 40.0 35.0 41.0 32.0 41.0 35 37.082498915439324 40.0 36.0 41.0 32.0 41.0 36 36.93050704854888 40.0 35.0 41.0 31.0 41.0 37 36.93007760634172 40.0 35.0 41.0 31.0 41.0 38 36.77655859037787 39.0 35.0 41.0 31.0 41.0 39 36.690216605390816 39.0 35.0 41.0 31.0 41.0 40 36.62863546929707 39.0 35.0 41.0 31.0 41.0 41 36.47566202021884 39.0 35.0 41.0 30.0 41.0 42 36.4777259720512 39.0 35.0 41.0 30.0 41.0 43 36.437318966008334 39.0 35.0 41.0 30.0 41.0 44 36.40569142386384 39.0 35.0 41.0 30.0 41.0 45 36.39187258712637 39.0 35.0 41.0 30.0 41.0 46 36.269389534756336 39.0 35.0 41.0 30.0 41.0 47 36.27597139389053 39.0 35.0 41.0 30.0 41.0 48 36.18100769928529 39.0 35.0 41.0 30.0 41.0 49 36.15189984356034 39.0 35.0 40.0 30.0 41.0 50 36.05125918590027 39.0 35.0 40.0 30.0 41.0 51 34.929253778434116 37.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 3.0 8 13.0 9 22.0 10 34.0 11 20.0 12 16.0 13 18.0 14 15.0 15 28.0 16 55.0 17 80.0 18 174.0 19 287.0 20 477.0 21 700.0 22 1109.0 23 1762.0 24 2509.0 25 3685.0 26 4611.0 27 5227.0 28 5347.0 29 6026.0 30 6916.0 31 8873.0 32 11700.0 33 16901.0 34 29099.0 35 32761.0 36 38000.0 37 58136.0 38 102474.0 39 119313.0 40 15.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.17626411572153 20.85511583984435 23.68329951841124 13.285320526022884 2 34.617862166579755 22.296814678159357 25.257336669544223 17.827986485716664 3 32.431650767080185 21.854883590487418 28.99195014964746 16.72151549278493 4 27.54521193849336 25.844971363216086 27.07983681196128 19.529979886329276 5 24.15108477977941 30.567521022948867 26.215474818473027 19.0659193787987 6 24.769393916819674 33.62422930461037 26.653681152307374 14.952695626262583 7 79.0625013693948 5.5829677962165265 10.383956389705656 4.970574444683024 8 80.53377913524362 4.818955053176339 10.057492670999068 4.589773140580974 9 74.96658676704513 6.941845637436843 12.637870667782632 5.453696927735393 10 38.094372116054565 28.671840422781468 18.830602577529657 14.403184883634307 11 26.905430691095212 26.30377339474065 27.392935237485922 19.39786067667822 12 24.934816807842143 23.099827784910804 31.630171382497164 20.335184024749893 13 23.795042133539 24.312344710630448 32.52608423202149 19.366528923809064 14 20.5100283519498 27.013229449218457 31.535957020722776 20.940785178108964 15 20.0214282897245 26.183047549769285 34.16475681739504 19.630767343111177 16 23.17914313133482 25.737829914593586 31.34248892433491 19.740538029736683 17 23.058636389530374 25.02464910627818 29.144226850654896 22.772487653536544 18 24.01984198279602 25.49396808981477 30.007493328308566 20.478696599080642 19 22.944702742733444 27.079398605627446 29.396852802110402 20.57904584952871 20 24.47470015731607 26.250531325179775 29.287958528152565 19.98680998935159 21 24.520492719201766 26.169682256587336 30.060954501036356 19.248870523174542 22 23.505168643707577 24.4291266985973 29.658681086576426 22.407023571118696 23 21.5395941332936 26.32546460826545 30.113977467430313 22.020963791010637 24 21.85926565382576 25.167066164774344 31.09818889322226 21.875479288177633 25 21.792877394249857 27.130668746686066 28.806150664101697 22.27030319496238 26 21.011336397856294 27.01169572705004 29.25049188660973 22.726475988483937 27 21.715533976328093 26.464376016090934 29.29299790099166 22.527092106589308 28 19.849651406861433 26.504910101970612 30.54144774608572 23.10399074508223 29 20.560860286674583 25.685902464034214 29.878879769328186 23.874357479963017 30 21.599190194695076 25.00536802758947 29.99347072562587 23.401971052089586 31 22.04769437737453 26.212626477303104 28.448574295692868 23.291104849629495 32 21.663387422601808 26.657625009311886 28.27022431782229 23.40876325026402 33 21.53039180028308 25.513687374837318 28.695722667975442 24.26019815690416 34 20.728255106199306 25.6499695446598 30.192416401186662 23.429358947954235 35 20.650035275609874 25.15589190326157 29.95227933024544 24.24179349088312 36 22.439669942989358 26.560124100033743 28.622104003891273 22.37810195308563 37 21.153972559519374 27.268046432343134 28.826527258624996 22.751453749512496 38 21.04420187289387 27.50971722545278 28.53336722128982 22.912713680363535 39 21.863428613997186 24.770927638988095 29.62734933370727 23.73829441330745 40 22.43178222898034 23.79044096703374 31.44590561911982 22.331871184866106 41 20.592411142710656 25.03648067729171 29.968712067764226 24.402396112233408 42 21.88950189086033 25.178897735787874 29.168766405349622 23.762833968002173 43 22.093267836093304 25.45518682927043 28.601289203034142 23.850256131602126 44 21.44757080318839 25.428018036572702 28.48012515172894 24.644286008509965 45 21.205023597411078 24.670140182206193 28.649272796589003 25.47556342379373 46 21.578813600171777 25.05378982747817 29.43979702282617 23.92759954952389 47 20.531281359140767 25.140773784744287 30.723303374626976 23.604641481487974 48 20.514410415288143 24.52925684587845 30.49061581136094 24.46571692747247 49 21.443407843016963 24.45322804695819 30.44526145580908 23.658102654215764 50 20.265947424004064 24.128078947253105 31.08000333036814 24.52597029837469 51 20.215334592446197 23.43133087645649 29.907801387361253 26.44553314373606 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 182.0 1 355.5 2 529.0 3 2703.0 4 4877.0 5 3255.5 6 1634.0 7 1648.0 8 1662.0 9 1624.0 10 1586.0 11 1583.0 12 1580.0 13 1540.0 14 1500.0 15 1462.0 16 1424.0 17 1412.5 18 1401.0 19 1365.0 20 1329.0 21 1359.5 22 1390.0 23 1601.0 24 1812.0 25 2151.5 26 3225.5 27 3960.0 28 4628.0 29 5296.0 30 6661.0 31 8026.0 32 8802.0 33 9578.0 34 11204.0 35 12830.0 36 14051.0 37 15272.0 38 17006.5 39 18741.0 40 20139.0 41 21537.0 42 22948.5 43 24360.0 44 27777.5 45 31195.0 46 34911.0 47 38627.0 48 41801.0 49 44975.0 50 43707.0 51 42439.0 52 37351.5 53 32264.0 54 28988.0 55 25712.0 56 23509.0 57 21306.0 58 19987.5 59 18669.0 60 17588.5 61 16508.0 62 14775.0 63 13042.0 64 11603.0 65 10164.0 66 8561.0 67 6958.0 68 5719.5 69 4481.0 70 3797.5 71 3114.0 72 2397.5 73 1681.0 74 1359.0 75 870.5 76 704.0 77 494.5 78 285.0 79 207.5 80 130.0 81 97.5 82 65.0 83 44.0 84 23.0 85 19.0 86 15.0 87 10.0 88 5.0 89 4.0 90 3.0 91 3.0 92 3.0 93 3.0 94 3.0 95 2.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 456406.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.3783883409478 #Duplication Level Percentage of deduplicated Percentage of total 1 73.44449128215629 28.18681207929949 2 8.896634761212617 6.828770075867864 3 3.43666335036792 3.956808019725683 4 2.0431166458613172 3.1364609624288144 5 1.5491293013756007 2.972654295926698 6 1.2728334019049483 2.930957675498268 7 1.0911367855808227 2.931324990308001 8 1.0118515972949655 3.106658683551561 9 0.8363563651611157 2.888820843621916 >10 6.343950169657813 38.525009765854925 >50 0.04557086573983664 1.2176139371115873 >100 0.024227548874343512 1.6986821344467644 >500 0.002884232008850418 0.7210488351222615 >1k 0.0011536928035401671 0.8983777012361489 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2953 0.6470116519064166 No Hit GCTGTCTCTTATACACATCTGACGCCCACTTTGTCGTATGCCGTCTTCTGC 1105 0.24210899944347797 TruSeq Adapter, Index 27 (95% over 23bp) GTGAATGATACCTGTCTCTTATACACATCTGACGCCCACTTTGTCGTATGC 816 0.1787881842044145 No Hit CGCTGTCTCTTATACACATCTGACGCCCACTTTGTCGTATGCCGTCTTCTG 741 0.16235544668562638 No Hit CCTGTCTCTTATACACATCTGACGCCCACTTTGTCGTATGCCGTCTTCTGC 663 0.14526539966608676 TruSeq Adapter, Index 27 (95% over 23bp) CTGTCTCTTATACACATCTGACGCCCACTTTGTCGTATGCCGTCTTCTGCT 521 0.11415274996384797 TruSeq Adapter, Index 20 (95% over 22bp) CGTTTCTGTCTCTTATACACATCTGACGCCCACTTTGTCGTATGCCGTCTT 516 0.1130572341292621 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.11765840063452278 0.0 2 0.0 0.0 0.0 0.6244440257139476 0.0 3 0.0 0.0 0.0 0.9493740222521176 0.0 4 0.0 0.0 0.0 1.3610688728894886 0.0 5 0.0 0.0 0.0 2.378803083219765 0.0 6 0.0 0.0 0.0 3.211176014338111 0.0 7 0.0 0.0 0.0 3.9504300995166584 0.0 8 0.0 0.0 0.0 4.944282064652962 0.0 9 0.0 0.0 0.0 5.309746147070809 0.0 10 0.0 0.0 0.0 6.135326880014723 0.0 11 0.0 0.0 0.0 7.258230610465244 0.0 12 0.0 0.0 0.0 8.30773477999851 0.0 13 0.0 0.0 0.0 8.727317344644899 0.0 14 0.0 0.0 0.0 8.946201408395156 0.0 15 0.0 0.0 0.0 9.23607489822658 0.0 16 0.0 0.0 0.0 9.819327528560098 0.0 17 0.0 0.0 0.0 10.564716502412326 0.0 18 0.0 0.0 0.0 11.353926109647988 0.0 19 0.0 0.0 0.0 11.830913704026678 0.0 20 0.0 0.0 0.0 12.272844791698619 0.0 21 0.0 0.0 0.0 12.8403219940141 0.0 22 0.0 0.0 0.0 13.457316512052865 0.0 23 2.1910316691717461E-4 0.0 0.0 14.074530133258547 0.0 24 2.1910316691717461E-4 0.0 0.0 14.554585171974075 0.0 25 2.1910316691717461E-4 0.0 0.0 15.030039044184345 0.0 26 2.1910316691717461E-4 0.0 0.0 15.431436045976609 0.0 27 2.1910316691717461E-4 0.0 0.0 15.845760134616986 0.0 28 2.1910316691717461E-4 0.0 0.0 16.28900584129043 0.0 29 2.1910316691717461E-4 0.0 0.0 16.757667515326265 0.0 30 2.1910316691717461E-4 0.0 0.0 17.288335385599662 0.0 31 2.1910316691717461E-4 0.0 0.0 17.76094091664001 0.0 32 2.1910316691717461E-4 0.0 0.0 18.237928511018698 0.0 33 2.1910316691717461E-4 0.0 0.0 18.67438201951771 0.0 34 4.3820633383434923E-4 0.0 0.0 19.155751677234743 0.0 35 4.3820633383434923E-4 0.0 0.0 19.612362677090136 0.0 36 6.573095007515238E-4 0.0 0.0 20.035012686073365 0.0 37 6.573095007515238E-4 0.0 0.0 20.497101265101687 0.0 38 6.573095007515238E-4 0.0 0.0 20.94670096361573 0.0 39 6.573095007515238E-4 0.0 0.0 21.450857350692146 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGATGCA 20 7.028811E-4 45.000004 10 TGCGTTG 20 7.028811E-4 45.000004 1 TTAAGCG 25 3.8870967E-5 45.0 1 CGTTTTT 1525 0.0 43.52459 1 CACAACG 75 0.0 42.0 12 GCGATAA 35 6.240012E-6 38.57143 9 CTCGAAC 35 6.240012E-6 38.57143 12 GTACGAG 35 6.240012E-6 38.57143 1 CTAAGCC 30 1.13884365E-4 37.500004 17 GTTCGCG 30 1.13884365E-4 37.500004 1 TCTCGCG 30 1.13884365E-4 37.500004 32 CTCGCGC 30 1.13884365E-4 37.500004 33 ATGCGCG 30 1.13884365E-4 37.500004 1 ACGTAGG 60 1.546141E-10 37.500004 2 TCGCGCA 30 1.13884365E-4 37.500004 34 CTTGACC 200 0.0 37.125 7 CACGGGC 80 0.0 36.562504 4 AACGAGC 80 0.0 36.562504 15 GCGATGC 80 0.0 36.562504 9 TAGGGCG 155 0.0 36.29032 5 >>END_MODULE