Basic Statistics
Measure | Value |
---|---|
Filename | SRR2935534.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 513888 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7206 | 1.4022510741640202 | No Hit |
CGTTTCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTT | 1649 | 0.3208870415343421 | No Hit |
CGCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTG | 1441 | 0.2804112958465658 | No Hit |
CGTTCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTC | 1245 | 0.24227068933308427 | No Hit |
CGTTTTCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCT | 981 | 0.19089762749859893 | No Hit |
CCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGC | 741 | 0.14419484401270316 | Illumina Single End Adapter 1 (95% over 21bp) |
CGTCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCT | 738 | 0.14361105921912948 | No Hit |
GCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGC | 650 | 0.126486705274301 | Illumina Single End Adapter 1 (95% over 21bp) |
CTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGCT | 538 | 0.104692072980883 | Illumina Single End Adapter 1 (95% over 22bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCGCAA | 30 | 2.1631495E-6 | 45.000004 | 18 |
TGTTACG | 30 | 2.1631495E-6 | 45.000004 | 1 |
TTGCACG | 25 | 3.887785E-5 | 45.0 | 1 |
CGTTTTT | 3405 | 0.0 | 43.480175 | 1 |
CGTATGG | 50 | 1.0786607E-9 | 40.5 | 2 |
ATTAGCG | 40 | 3.4532422E-7 | 39.375004 | 1 |
TACGAAT | 40 | 3.4532422E-7 | 39.375004 | 12 |
CGTAAGG | 80 | 0.0 | 39.375004 | 2 |
CACGGGT | 35 | 6.2415493E-6 | 38.571426 | 4 |
CGTTCTG | 175 | 0.0 | 38.571426 | 1 |
CTAACGG | 35 | 6.2415493E-6 | 38.571426 | 2 |
TTACACG | 430 | 0.0 | 38.197674 | 34 |
CGGGTCC | 30 | 1.1390435E-4 | 37.500004 | 6 |
TAGGGCC | 90 | 0.0 | 37.5 | 5 |
TAGACGG | 85 | 0.0 | 37.058823 | 2 |
CGGGTAC | 55 | 2.743036E-9 | 36.81818 | 6 |
TTTAGCG | 25 | 0.002106027 | 36.0 | 1 |
CGGCGAA | 25 | 0.002106027 | 36.0 | 31 |
AACCCGC | 25 | 0.002106027 | 36.0 | 21 |
TTATGCG | 25 | 0.002106027 | 36.0 | 1 |