FastQCFastQC Report
Sat 14 Jan 2017
SRR2935534.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2935534.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513888
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT72061.4022510741640202No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTT16490.3208870415343421No Hit
CGCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTG14410.2804112958465658No Hit
CGTTCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTC12450.24227068933308427No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCT9810.19089762749859893No Hit
CCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGC7410.14419484401270316Illumina Single End Adapter 1 (95% over 21bp)
CGTCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCT7380.14361105921912948No Hit
GCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGC6500.126486705274301Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGCT5380.104692072980883Illumina Single End Adapter 1 (95% over 22bp)

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGCAA302.1631495E-645.00000418
TGTTACG302.1631495E-645.0000041
TTGCACG253.887785E-545.01
CGTTTTT34050.043.4801751
CGTATGG501.0786607E-940.52
ATTAGCG403.4532422E-739.3750041
TACGAAT403.4532422E-739.37500412
CGTAAGG800.039.3750042
CACGGGT356.2415493E-638.5714264
CGTTCTG1750.038.5714261
CTAACGG356.2415493E-638.5714262
TTACACG4300.038.19767434
CGGGTCC301.1390435E-437.5000046
TAGGGCC900.037.55
TAGACGG850.037.0588232
CGGGTAC552.743036E-936.818186
TTTAGCG250.00210602736.01
CGGCGAA250.00210602736.031
AACCCGC250.00210602736.021
TTATGCG250.00210602736.01