SRR2935534.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935534.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	513888
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7206	1.4022510741640202	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTT	1649	0.3208870415343421	No Hit
CGCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTG	1441	0.2804112958465658	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTC	1245	0.24227068933308427	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCT	981	0.19089762749859893	No Hit
CCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGC	741	0.14419484401270316	Illumina Single End Adapter 1 (95% over 21bp)
CGTCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCT	738	0.14361105921912948	No Hit
GCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGC	650	0.126486705274301	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGCT	538	0.104692072980883	Illumina Single End Adapter 1 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGCAA	30	2.1631495E-6	45.000004	18
TGTTACG	30	2.1631495E-6	45.000004	1
TTGCACG	25	3.887785E-5	45.0	1
CGTTTTT	3405	0.0	43.480175	1
CGTATGG	50	1.0786607E-9	40.5	2
ATTAGCG	40	3.4532422E-7	39.375004	1
TACGAAT	40	3.4532422E-7	39.375004	12
CGTAAGG	80	0.0	39.375004	2
CACGGGT	35	6.2415493E-6	38.571426	4
CGTTCTG	175	0.0	38.571426	1
CTAACGG	35	6.2415493E-6	38.571426	2
TTACACG	430	0.0	38.197674	34
CGGGTCC	30	1.1390435E-4	37.500004	6
TAGGGCC	90	0.0	37.5	5
TAGACGG	85	0.0	37.058823	2
CGGGTAC	55	2.743036E-9	36.81818	6
TTTAGCG	25	0.002106027	36.0	1
CGGCGAA	25	0.002106027	36.0	31
AACCCGC	25	0.002106027	36.0	21
TTATGCG	25	0.002106027	36.0	1