##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935534.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 513888 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.264989647549662 31.0 31.0 33.0 28.0 34.0 2 31.324994940531788 31.0 31.0 34.0 28.0 34.0 3 31.06358000186811 31.0 31.0 34.0 27.0 34.0 4 34.8051482034996 35.0 35.0 37.0 32.0 37.0 5 34.878969736596304 35.0 35.0 37.0 33.0 37.0 6 35.096240815119245 37.0 35.0 37.0 32.0 37.0 7 35.4750879569089 37.0 35.0 37.0 33.0 37.0 8 35.326425213276046 37.0 35.0 37.0 33.0 37.0 9 37.27370944641634 39.0 37.0 39.0 34.0 39.0 10 36.63553342362538 38.0 35.0 39.0 32.0 39.0 11 36.847750871785294 39.0 37.0 39.0 33.0 39.0 12 36.991161498225296 39.0 37.0 39.0 33.0 39.0 13 37.077139376673514 39.0 37.0 39.0 33.0 39.0 14 38.167616289930876 40.0 38.0 41.0 33.0 41.0 15 38.350553038794445 40.0 38.0 41.0 34.0 41.0 16 38.28421951864998 40.0 38.0 41.0 34.0 41.0 17 38.19685417834236 40.0 37.0 41.0 34.0 41.0 18 38.08090673454138 39.0 37.0 41.0 34.0 41.0 19 37.884815368329285 39.0 37.0 41.0 34.0 41.0 20 37.91117519770845 39.0 36.0 41.0 34.0 41.0 21 37.801264088673015 39.0 36.0 41.0 33.0 41.0 22 37.899855610561055 40.0 36.0 41.0 34.0 41.0 23 37.97155022105984 40.0 36.0 41.0 34.0 41.0 24 37.96687021296469 40.0 36.0 41.0 34.0 41.0 25 37.535887197210286 39.0 35.0 41.0 33.0 41.0 26 37.65594448595803 39.0 35.0 41.0 33.0 41.0 27 37.72113184195778 40.0 36.0 41.0 33.0 41.0 28 37.591891618407125 40.0 35.0 41.0 33.0 41.0 29 37.47986915436827 40.0 35.0 41.0 33.0 41.0 30 37.180796204620464 39.0 35.0 41.0 32.0 41.0 31 37.10237639329971 39.0 35.0 41.0 32.0 41.0 32 36.98891392677004 39.0 35.0 41.0 32.0 41.0 33 36.82168877265085 40.0 35.0 41.0 31.0 41.0 34 36.57082866305498 40.0 35.0 41.0 30.0 41.0 35 36.51344261784669 40.0 35.0 41.0 30.0 41.0 36 36.344182000747246 39.0 35.0 41.0 30.0 41.0 37 36.299294787969366 39.0 35.0 41.0 30.0 41.0 38 36.112898141229216 39.0 35.0 41.0 29.0 41.0 39 36.01505191792764 39.0 35.0 41.0 29.0 41.0 40 35.919449374182705 39.0 35.0 41.0 28.0 41.0 41 35.75081146086307 39.0 35.0 41.0 27.0 41.0 42 35.765970406002864 39.0 35.0 41.0 27.0 41.0 43 35.71122695996015 39.0 35.0 41.0 27.0 41.0 44 35.68796702783486 39.0 35.0 41.0 27.0 41.0 45 35.671897378417086 39.0 35.0 41.0 27.0 41.0 46 35.56306821719908 39.0 35.0 40.0 27.0 41.0 47 35.57239126035245 38.0 35.0 41.0 27.0 41.0 48 35.47467152375615 38.0 35.0 40.0 27.0 41.0 49 35.400478314340866 38.0 35.0 40.0 27.0 41.0 50 35.283624058160534 38.0 35.0 40.0 26.0 41.0 51 34.166728937044645 37.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 3.0 8 23.0 9 47.0 10 48.0 11 35.0 12 28.0 13 16.0 14 24.0 15 61.0 16 71.0 17 129.0 18 228.0 19 361.0 20 591.0 21 1025.0 22 1464.0 23 2357.0 24 3611.0 25 5743.0 26 7552.0 27 8118.0 28 7912.0 29 7648.0 30 8279.0 31 9974.0 32 12930.0 33 18040.0 34 30695.0 35 36366.0 36 41919.0 37 63789.0 38 111545.0 39 133233.0 40 23.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.14744068746497 20.53132200012454 22.703390622081077 17.61784669032941 2 38.26670402889346 21.467129024223176 23.55318668659319 16.71298026029018 3 31.12195653527617 21.639150943396228 30.904788592066758 16.334103929260852 4 26.598791954667167 24.43937200323806 30.072895261224236 18.888940780870538 5 23.5551326359051 28.81989849928389 29.00437449405318 18.620594370757832 6 24.058355127965626 31.981287751416655 28.960396039603957 14.999961081013764 7 76.25922379973846 5.393198517965004 13.624758702285323 4.722818980011208 8 77.39410143844573 4.681370259667476 13.418488075222617 4.506040226664176 9 71.29841521888038 7.117115013388132 15.362686032754219 6.221783734977271 10 36.33204122299023 28.808611993274802 21.39649106420076 13.462855719534216 11 25.294032941029954 24.460388255806713 31.373178591444052 18.872400211719285 12 23.284645681549286 21.989616414471634 34.7877358490566 19.938002054922475 13 23.072731801482036 23.091607509807584 35.18548788841148 18.650172800298897 14 19.89947225854661 25.86380689955788 34.76633040662557 19.47039043526994 15 18.438064325300456 25.33334111713058 36.82670153807834 19.40189301949063 16 21.704924030138866 26.495462046204622 33.12511675695872 18.6744971666978 17 22.471238869169934 24.852497042157047 31.506476119310044 21.169787969362975 18 23.64347873466592 24.073922722460924 32.60788342985242 19.674715113020735 19 23.02174792950993 25.665125474811635 31.132075471698112 20.181051123980325 20 23.856170994457937 25.458854847748924 30.77460458309982 19.910369574693316 21 23.442072980882994 25.460995391992032 32.805786474873905 18.291145152251072 22 23.122158914004608 23.293986238246468 32.59834827822405 20.98550656952488 23 21.103625692757955 25.02374058160533 32.486650787720286 21.385982937916435 24 20.827884675259977 23.985965813562487 33.303365713929885 21.882783797247647 25 21.915670340618966 25.99457469331839 30.90868049069058 21.181074475372068 26 21.061009402827075 25.532995516532786 31.295535213898752 22.11045986674139 27 21.138458185441188 24.833815928762686 32.60768883492123 21.4200370508749 28 20.495516532785356 25.280605890777757 32.84626222056168 21.37761535587521 29 20.97966872158914 24.435480104614236 33.41545239429603 21.169398779500593 30 22.047800298897815 23.4307864748739 33.55225263092347 20.969160595304814 31 22.622439130705523 25.33139516781867 31.070972663304065 20.975193038171742 32 22.837077339809454 25.400087178529173 31.89449841210536 19.868337069556013 33 22.613487763870726 24.28155551404197 31.724422442244226 21.380534279843076 34 21.93026496045831 25.469362974033256 31.73454137866617 20.86583068684227 35 21.951670402889345 26.045947755152877 31.157372812752975 20.84500902920481 36 24.423220623949188 26.119115449280777 29.460505012765424 19.997158914004608 37 23.664494987234573 26.457905224484712 29.402126533408058 20.475473254872657 38 22.744060962700043 26.521926956846624 29.713478423314026 21.0205336571393 39 23.35956473005791 24.812994271125223 29.324288560931567 22.503152437885298 40 24.114982252942273 24.59582632791581 30.54906905784918 20.740122361292734 41 22.095086867177283 25.211524690204868 30.0581060464537 22.635282396164143 42 23.648927392739274 25.25453016999813 29.9960302634037 21.100512173858895 43 23.03439660003736 24.414463852045582 30.571447474936175 21.979692072980882 44 22.477271312036866 25.038918986238244 29.7496730805156 22.73413662120929 45 22.698331153870104 24.13638769537331 29.78606233264836 23.379218818108228 46 22.270416900180585 25.48454137866617 28.93996357182888 23.305078149324366 47 21.769334952363163 25.771958092035618 30.390863378790712 22.06784357681051 48 22.141011270938414 24.518961330095273 30.777328912136497 22.562698486829817 49 23.081683168316832 24.28330686842269 30.816637088237126 21.81837287502335 50 20.874392863814684 24.637469643190734 32.097266330406626 22.39087116258796 51 21.72496730805156 23.723651846316706 30.370041721153246 24.181339124478484 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 215.0 1 363.5 2 512.0 3 5761.5 4 11011.0 5 7166.5 6 3322.0 7 3299.0 8 3276.0 9 3253.5 10 3231.0 11 3184.0 12 3137.0 13 3089.5 14 3042.0 15 2881.0 16 2720.0 17 2612.0 18 2504.0 19 2404.0 20 2304.0 21 2347.5 22 2391.0 23 2521.0 24 2651.0 25 3091.0 26 4501.5 27 5472.0 28 6163.5 29 6855.0 30 7467.5 31 8080.0 32 9283.0 33 10486.0 34 12347.5 35 14209.0 36 15646.5 37 17084.0 38 18192.5 39 19301.0 40 20789.5 41 22278.0 42 24508.5 43 26739.0 44 29207.0 45 31675.0 46 36608.5 47 41542.0 48 43977.5 49 46413.0 50 45619.5 51 44826.0 52 39454.0 53 34082.0 54 31184.0 55 28286.0 56 25983.0 57 23680.0 58 22424.0 59 21168.0 60 19780.5 61 18393.0 62 16880.5 63 15368.0 64 13587.0 65 11806.0 66 10135.0 67 8464.0 68 6875.5 69 5287.0 70 4518.0 71 3749.0 72 2903.0 73 2057.0 74 1714.0 75 1059.0 76 747.0 77 557.0 78 367.0 79 251.0 80 135.0 81 106.0 82 77.0 83 47.5 84 18.0 85 15.0 86 12.0 87 7.0 88 2.0 89 3.5 90 5.0 91 3.0 92 1.0 93 3.0 94 5.0 95 3.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 513888.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.8004011538681 #Duplication Level Percentage of deduplicated Percentage of total 1 72.47336006081612 28.84468803389204 2 8.637008522259032 6.875128079105741 3 3.759059948757812 4.4883628176599935 4 2.4714563774825637 3.9345982103236676 5 1.913590200734216 3.80808288166664 6 1.5691935467042248 3.7472719588133527 7 1.4118050703669596 3.933328570616898 8 1.1851850011321772 3.7736670789286615 9 1.003935237528078 3.5961322667509226 >10 5.518148961922637 31.720245264566106 >50 0.033070895205638676 0.8964148998626174 >100 0.019743818033097618 1.3981557839782235 >500 0.0024679772541372023 0.7166604327599494 >1k 0.0014807863524823213 0.8516236228109595 >5k 4.935954508274405E-4 1.4156400982643078 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7206 1.4022510741640202 No Hit CGTTTCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTT 1649 0.3208870415343421 No Hit CGCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTG 1441 0.2804112958465658 No Hit CGTTCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTC 1245 0.24227068933308427 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCT 981 0.19089762749859893 No Hit CCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGC 741 0.14419484401270316 Illumina Single End Adapter 1 (95% over 21bp) CGTCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCT 738 0.14361105921912948 No Hit GCTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGC 650 0.126486705274301 Illumina Single End Adapter 1 (95% over 21bp) CTGTCTCTTATACACATCTGACGCTTGTCAGGTCGTATGCCGTCTTCTGCT 538 0.104692072980883 Illumina Single End Adapter 1 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.1083893766735164 0.0 2 0.0 0.0 0.0 0.4569088984370135 0.0 3 0.0 0.0 0.0 0.8966934429291986 0.0 4 0.0 0.0 0.0 1.3353104178342363 0.0 5 0.0 0.0 0.0 2.4199825642941653 0.0 6 0.0 0.0 0.0 3.607400834423065 0.0 7 0.0 0.0 0.0 4.436375241297715 0.0 8 0.0 0.0 0.0 5.469674325923158 0.0 9 0.0 0.0 0.0 5.996831994520207 0.0 10 0.0 0.0 0.0 6.786109035431845 0.0 11 0.0 0.0 0.0 7.728337692259792 0.0 12 0.0 0.0 0.0 8.484144405006539 0.0 13 0.0 0.0 0.0 8.892988355439318 0.0 14 0.0 0.0 0.0 9.105291425368952 0.0 15 0.0 0.0 0.0 9.338999937729621 0.0 16 0.0 0.0 0.0 9.773919608942027 0.0 17 0.0 0.0 0.0 10.340774643502087 0.0 18 0.0 0.0 0.0 10.921640513107915 0.0 19 0.0 0.0 0.0 11.271911389252132 0.0 20 0.0 0.0 0.0 11.609144405006539 0.0 21 0.0 0.0 0.0 12.0672208730307 0.0 22 1.9459493119123233E-4 0.0 0.0 12.53619465720157 0.0 23 1.9459493119123233E-4 0.0 0.0 12.98784949249642 0.0 24 1.9459493119123233E-4 0.0 0.0 13.356996076966187 0.0 25 1.9459493119123233E-4 0.0 0.0 13.69072638395915 0.0 26 1.9459493119123233E-4 0.0 0.0 14.007916121800859 0.0 27 3.8918986238246466E-4 0.0 0.0 14.34748427672956 0.0 28 5.837847935736969E-4 0.0 0.0 14.66506320443365 0.0 29 5.837847935736969E-4 0.0 0.0 15.008134068123793 0.0 30 5.837847935736969E-4 0.0 0.0 15.429626689084003 0.0 31 7.783797247649293E-4 0.0 0.0 15.801303007659257 0.0 32 7.783797247649293E-4 0.0 0.0 16.199249641945325 0.0 33 7.783797247649293E-4 0.0 0.0 16.576374618593935 0.0 34 9.729746559561616E-4 0.0 0.0 16.955445544554454 0.0 35 9.729746559561616E-4 0.0 0.0 17.353781368702908 0.0 36 9.729746559561616E-4 0.0 0.0 17.70930630798929 0.0 37 9.729746559561616E-4 0.0 0.0 18.07903667725263 0.0 38 0.0011675695871473939 0.0 0.0 18.478929260850613 0.0 39 0.0011675695871473939 0.0 0.0 18.95062737405816 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCGCAA 30 2.1631495E-6 45.000004 18 TGTTACG 30 2.1631495E-6 45.000004 1 TTGCACG 25 3.887785E-5 45.0 1 CGTTTTT 3405 0.0 43.480175 1 CGTATGG 50 1.0786607E-9 40.5 2 ATTAGCG 40 3.4532422E-7 39.375004 1 TACGAAT 40 3.4532422E-7 39.375004 12 CGTAAGG 80 0.0 39.375004 2 CACGGGT 35 6.2415493E-6 38.571426 4 CGTTCTG 175 0.0 38.571426 1 CTAACGG 35 6.2415493E-6 38.571426 2 TTACACG 430 0.0 38.197674 34 CGGGTCC 30 1.1390435E-4 37.500004 6 TAGGGCC 90 0.0 37.5 5 TAGACGG 85 0.0 37.058823 2 CGGGTAC 55 2.743036E-9 36.81818 6 TTTAGCG 25 0.002106027 36.0 1 CGGCGAA 25 0.002106027 36.0 31 AACCCGC 25 0.002106027 36.0 21 TTATGCG 25 0.002106027 36.0 1 >>END_MODULE