SRR2935533.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935533.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	350661
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5165	1.4729325473890738	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCTT	854	0.24354005720624763	No Hit
CGCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCTTCTG	748	0.21331143183872742	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCTTC	664	0.18935667211352275	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCTTC	554	0.1579873439019452	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCT	460	0.1311808270665971	No Hit
CCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCTTCTGC	456	0.13004012422253972	No Hit
GCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCTTCTGC	422	0.12034415004805211	No Hit
CGTCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCTTCT	403	0.11492581153877961	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	376	0.10722606734139241	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTAGCG	25	3.885243E-5	45.0	1
CGCATAC	20	7.0265745E-4	45.0	26
GGCCGAT	20	7.0265745E-4	45.0	8
GTTAGCG	20	7.0265745E-4	45.0	1
ATATGCG	20	7.0265745E-4	45.0	1
AGACACG	20	7.0265745E-4	45.0	24
CTCGAGG	20	7.0265745E-4	45.0	2
CGTAAGG	50	2.1827873E-11	45.0	2
CGGTCTA	25	3.885243E-5	45.0	31
CGCACGG	25	3.885243E-5	45.0	2
CGTTTTT	2190	0.0	43.356163	1
ATAGCGG	45	1.9217623E-8	40.0	2
ACGGGAT	165	0.0	39.545456	5
ACGGGTC	40	3.4490586E-7	39.375	5
AAACGGG	80	0.0	39.375	3
CACGACG	35	6.2358795E-6	38.571426	26
GCTACGG	35	6.2358795E-6	38.571426	2
GCGTAAG	35	6.2358795E-6	38.571426	1
ATCGTAG	30	1.1383045E-4	37.500004	1
GCGTATG	30	1.1383045E-4	37.500004	1