##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935532.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 365611 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.22789795711836 31.0 31.0 33.0 28.0 34.0 2 31.241543607823616 31.0 31.0 34.0 28.0 34.0 3 31.068974948784362 31.0 31.0 34.0 27.0 34.0 4 34.89013733175424 35.0 35.0 37.0 32.0 37.0 5 34.88749791445006 35.0 35.0 37.0 33.0 37.0 6 35.077861442899696 37.0 35.0 37.0 32.0 37.0 7 35.57935893613704 37.0 35.0 37.0 33.0 37.0 8 35.28636446934036 37.0 35.0 37.0 33.0 37.0 9 37.15104578363342 39.0 37.0 39.0 33.0 39.0 10 36.53466115625624 38.0 35.0 39.0 32.0 39.0 11 36.714119651761024 39.0 37.0 39.0 32.0 39.0 12 36.7448763850103 39.0 35.0 39.0 33.0 39.0 13 36.745798129706166 39.0 35.0 39.0 33.0 39.0 14 37.78771152946711 40.0 36.0 41.0 33.0 41.0 15 37.99174532494919 40.0 37.0 41.0 33.0 41.0 16 37.91157541758864 39.0 36.0 41.0 33.0 41.0 17 37.83831449272588 39.0 36.0 41.0 33.0 41.0 18 37.81649622139378 39.0 36.0 41.0 33.0 41.0 19 37.7040761902678 39.0 36.0 41.0 33.0 41.0 20 37.84656916777668 39.0 36.0 41.0 33.0 41.0 21 37.76182609385385 39.0 36.0 41.0 33.0 41.0 22 37.887749548016885 40.0 36.0 41.0 33.0 41.0 23 37.93491169576408 40.0 36.0 41.0 34.0 41.0 24 37.941413141289516 40.0 36.0 41.0 34.0 41.0 25 37.52086780758785 39.0 35.0 41.0 33.0 41.0 26 37.624401344598496 39.0 35.0 41.0 33.0 41.0 27 37.687383585286 40.0 35.0 41.0 33.0 41.0 28 37.62864902861238 40.0 35.0 41.0 33.0 41.0 29 37.6302873819442 40.0 35.0 41.0 33.0 41.0 30 37.34204933658998 39.0 35.0 41.0 33.0 41.0 31 37.30716800096277 39.0 35.0 41.0 33.0 41.0 32 37.320791770488306 39.0 35.0 41.0 33.0 41.0 33 37.341340933396424 39.0 35.0 41.0 33.0 41.0 34 37.240337407791344 40.0 35.0 41.0 32.0 41.0 35 37.276208866801056 40.0 35.0 41.0 33.0 41.0 36 37.19738465199351 40.0 35.0 41.0 32.0 41.0 37 37.23379219990646 40.0 35.0 41.0 33.0 41.0 38 37.09934602624101 39.0 35.0 41.0 32.0 41.0 39 37.01994196017078 39.0 35.0 41.0 32.0 41.0 40 36.90986868557018 39.0 35.0 41.0 32.0 41.0 41 36.756921974448254 39.0 35.0 41.0 31.0 41.0 42 36.81216921810339 39.0 35.0 41.0 32.0 41.0 43 36.788419932660666 39.0 35.0 41.0 32.0 41.0 44 36.76436157555435 39.0 35.0 41.0 32.0 41.0 45 36.73741490272448 39.0 35.0 41.0 32.0 41.0 46 36.60721641307291 39.0 35.0 41.0 31.0 41.0 47 36.60386585742771 39.0 35.0 41.0 31.0 41.0 48 36.54406732839001 38.0 35.0 40.0 31.0 41.0 49 36.522027510113205 39.0 35.0 40.0 31.0 41.0 50 36.416839208885946 38.0 35.0 40.0 31.0 41.0 51 35.316401858806216 37.0 34.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 12.0 9 31.0 10 25.0 11 11.0 12 14.0 13 20.0 14 22.0 15 33.0 16 37.0 17 72.0 18 102.0 19 182.0 20 285.0 21 504.0 22 717.0 23 1032.0 24 1372.0 25 1938.0 26 2604.0 27 3220.0 28 3618.0 29 4177.0 30 5448.0 31 7250.0 32 9763.0 33 14568.0 34 28743.0 35 29994.0 36 28871.0 37 45043.0 38 78598.0 39 97292.0 40 12.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.59879762917418 21.037386730705588 23.924881910008178 11.43893373011206 2 32.84556536865686 23.439940264379356 25.52877238376307 18.185721983200725 3 33.86632240277235 23.066866150088483 25.96147271280131 17.10533873433786 4 30.21818271332099 25.78013243584028 24.69701403951194 19.304670811326794 5 25.307225439059543 30.346461129451797 23.22632524732571 21.11998818416295 6 25.262095505879202 34.98800637836389 24.16420731323729 15.585690802519617 7 79.11085826192318 6.802585261384368 8.818662458186433 5.2678940185060075 8 79.92018839695743 6.072300888102382 8.403740587673784 5.6037701272664115 9 73.09517492635615 8.454340815785082 11.176086058679854 7.274398199178908 10 42.19211128768007 25.985815525244043 17.27382381821116 14.548249368864722 11 33.87835705162044 25.121782440900304 22.611190582340246 18.388669925139016 12 32.99107521382015 20.53466662655117 27.285831115584596 19.18842704404408 13 27.638118109137856 22.420824318743147 28.030338255687052 21.910719316431944 14 20.978307545451315 26.94913446258455 28.149317170435246 23.923240821528893 15 21.37326283946599 25.38490362707905 32.98013462395825 20.261698909496705 16 24.408455981904265 24.343359472225945 31.085224459876752 20.16296008599304 17 23.3056445238245 24.997880260714254 27.878537571353156 23.81793764410808 18 24.997333231221162 25.173203213251245 27.87060564370328 21.958857911824317 19 25.311328160257762 28.606633826662765 25.23638511970373 20.845652893375746 20 29.31804568243297 25.044377767627342 25.91552223538132 19.722054314558367 21 26.619275678248194 27.271334834017573 25.70600993952589 20.403379548208342 22 23.51652439341267 25.594415922934484 27.12035469392332 23.76870498972952 23 24.849908782832024 26.015081603124635 27.68078640959927 21.454223204444066 24 26.210918161652685 23.111449053775736 27.820278930338528 22.85735385423305 25 23.860332429822954 24.640122972230046 26.3271619289354 25.1723826690116 26 22.13336032012166 27.113790340006183 26.784752099909465 23.968097239962695 27 22.749315529346763 27.12391038562844 26.88622607087861 23.240548014146185 28 20.13670267032447 29.015538372751365 28.204020119744754 22.643738837179406 29 23.735062675904175 27.23358979899401 27.067019318346546 21.96432820675527 30 25.233649972238254 25.875042052892283 26.911389427560987 21.97991854730848 31 24.849088238592383 27.36843256904196 24.975725566243902 22.806753626121754 32 25.977336568101066 27.49944613263824 25.35864621141049 21.164571087850202 33 26.48197127548132 27.101208661664995 25.16472425610827 21.252095806745423 34 22.52448640768467 27.1564586404676 27.676410173654514 22.642644778193215 35 22.1289840841769 26.60915563262593 27.378005585171124 23.883854698026045 36 22.860909545938167 30.371350971387624 25.360834329382868 21.40690515329134 37 23.789765625213683 29.3705605137701 25.8118601464398 21.02781371457642 38 22.69187743257178 28.70810779763191 24.992409965783306 23.607604804013008 39 24.85483204826988 24.858387739975 26.497014586541432 23.789765625213683 40 24.623712087437195 23.308379671289977 27.721813621581408 24.34609461969142 41 19.916523299353685 26.74618652064626 27.00274335290787 26.334546827092183 42 21.680966929331998 26.60177073446915 26.678628378249016 25.03863395794984 43 23.011616171285876 25.263463079611938 27.521327312362047 24.203593436740142 44 22.41343942058636 25.76563615427326 26.923150561662535 24.89777386347785 45 23.5805268441048 24.34062432476047 26.217482515569827 25.861366315564904 46 22.66452595791702 26.97840054046514 25.784235157038495 24.57283834457935 47 21.164024058357107 25.814595293905274 28.8661993211364 24.155181326601223 48 21.458052410895732 23.96618263673686 29.320780829898446 25.254984122468965 49 21.85628988186898 23.92023215931687 29.500206503633642 24.723271455180505 50 20.304640724704672 24.14916400217718 29.540139656629588 26.00605561648856 51 19.572988777689947 23.690206257470372 27.710052487479864 29.026752477359818 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 186.0 1 436.5 2 687.0 3 1206.0 4 1725.0 5 1221.0 6 717.0 7 724.0 8 731.0 9 698.5 10 666.0 11 626.0 12 586.0 13 640.5 14 695.0 15 657.5 16 620.0 17 624.0 18 628.0 19 748.0 20 868.0 21 910.0 22 952.0 23 1181.5 24 1411.0 25 1517.0 26 2201.5 27 2780.0 28 3468.0 29 4156.0 30 4749.0 31 5342.0 32 5898.5 33 6455.0 34 7929.5 35 9404.0 36 9488.0 37 9572.0 38 10650.0 39 11728.0 40 13203.5 41 14679.0 42 16058.0 43 17437.0 44 19683.0 45 21929.0 46 24923.0 47 27917.0 48 30304.5 49 32692.0 50 32856.0 51 33020.0 52 29870.0 53 26720.0 54 24732.0 55 22744.0 56 21688.0 57 20632.0 58 20549.0 59 20466.0 60 20773.0 61 21080.0 62 19106.0 63 17132.0 64 14215.5 65 11299.0 66 9016.5 67 6734.0 68 5234.5 69 3735.0 70 3143.0 71 2551.0 72 2042.0 73 1533.0 74 1172.0 75 642.0 76 473.0 77 355.0 78 237.0 79 196.5 80 156.0 81 114.0 82 72.0 83 40.5 84 9.0 85 8.5 86 8.0 87 7.5 88 7.0 89 5.0 90 3.0 91 2.5 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 365611.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.76818126171098 #Duplication Level Percentage of deduplicated Percentage of total 1 72.13353039620284 25.07951659862319 2 9.084396031995832 6.316958557871981 3 3.319188444331435 3.462064364228755 4 1.9678610512308767 2.7367579890822493 5 1.4773942644677194 2.5683155791012915 6 1.280005838620268 2.6702085007918708 7 1.1518971914837601 2.8034559243854216 8 0.9768837937514386 2.717157825022232 9 0.8421436171978195 2.635182173801405 >10 7.6532594499977975 44.3125214802244 >50 0.07877772272237372 1.841127663722111 >100 0.030723311861725753 1.7477291910459374 >500 0.003151108908894949 0.8205918596416907 >1k 7.877772272237373E-4 0.2884122924575101 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCGTCTTCTGC 1053 0.2880110281145808 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 901 0.24643678663935167 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 762 0.20841823686924082 No Hit CCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCGTCTTCTGC 744 0.2034949714313847 No Hit CTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCGTCTTCTGCT 589 0.1611001857165129 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.470294930951203E-4 0.0 0.0 0.16848508387329703 0.0 2 5.470294930951203E-4 0.0 0.0 0.8454340815785083 0.0 3 5.470294930951203E-4 0.0 0.0 1.1039055170659526 0.0 4 5.470294930951203E-4 0.0 0.0 1.4840910147670612 0.0 5 5.470294930951203E-4 0.0 0.0 2.5756883682383735 0.0 6 5.470294930951203E-4 0.0 0.0 3.2036782263115717 0.0 7 5.470294930951203E-4 0.0 0.0 3.8149836848453686 0.0 8 5.470294930951203E-4 0.0 0.0 4.798542713430394 0.0 9 5.470294930951203E-4 0.0 0.0 5.189121771500311 0.0 10 5.470294930951203E-4 0.0 0.0 6.085429595936665 0.0 11 5.470294930951203E-4 0.0 0.0 7.298193982128547 0.0 12 5.470294930951203E-4 0.0 0.0 8.356696051267605 0.0 13 5.470294930951203E-4 0.0 0.0 8.772164951273348 0.0 14 5.470294930951203E-4 0.0 0.0 8.953231713487833 0.0 15 5.470294930951203E-4 0.0 0.0 9.31563875266335 0.0 16 5.470294930951203E-4 0.0 0.0 9.949919449907142 0.0 17 5.470294930951203E-4 0.0 0.0 10.69223847203722 0.0 18 5.470294930951203E-4 0.0 0.0 11.473123073430504 0.0 19 5.470294930951203E-4 0.0 0.0 11.946850614450877 0.0 20 5.470294930951203E-4 0.0 0.0 12.45558804302934 0.0 21 5.470294930951203E-4 0.0 0.0 13.062243750871827 0.0 22 5.470294930951203E-4 0.0 0.0 13.694883359636334 0.0 23 5.470294930951203E-4 0.0 0.0 14.28731630065835 0.0 24 5.470294930951203E-4 0.0 0.0 14.763505474397652 0.0 25 5.470294930951203E-4 0.0 0.0 15.215625350440769 0.0 26 5.470294930951203E-4 0.0 0.0 15.614409850907112 0.0 27 5.470294930951203E-4 0.0 0.0 16.013467866120003 0.0 28 5.470294930951203E-4 0.0 0.0 16.439330326494552 0.0 29 5.470294930951203E-4 0.0 0.0 16.853705167514107 0.0 30 5.470294930951203E-4 0.0 0.0 17.35642527166852 0.0 31 8.205442396426804E-4 0.0 0.0 17.809092177204732 0.0 32 0.0010940589861902405 0.0 0.0 18.27953754126654 0.0 33 0.0010940589861902405 0.0 0.0 18.742598007171555 0.0 34 0.0013675737327378005 0.0 0.0 19.170922100265035 0.0 35 0.0013675737327378005 0.0 0.0 19.661881070317907 0.0 36 0.0013675737327378005 0.0 0.0 20.143267024241613 0.0 37 0.0016410884792853607 0.0 0.0 20.60796857862592 0.0 38 0.0016410884792853607 0.0 0.0 21.116979521950928 0.0 39 0.0016410884792853607 0.0 0.0 21.634742937165456 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCCCCTA 20 7.026968E-4 45.000004 9 TTCTAGA 40 6.7939254E-9 45.000004 39 GGTAATT 20 7.026968E-4 45.000004 8 GAATCGG 20 7.026968E-4 45.000004 2 GCCGATT 20 7.026968E-4 45.000004 9 GTCCGTA 20 7.026968E-4 45.000004 26 CGGGACG 20 7.026968E-4 45.000004 6 ACGCTCC 20 7.026968E-4 45.000004 22 CGTAAGG 30 2.161427E-6 45.000004 2 AAGGATC 20 7.026968E-4 45.000004 17 CTATCGC 25 3.8855702E-5 45.0 35 AATATGC 25 3.8855702E-5 45.0 16 GTAGACG 25 3.8855702E-5 45.0 1 CACGTGA 45 3.8380676E-10 45.0 43 GGCGATA 80 0.0 42.187504 8 CGTTAGG 70 0.0 41.785717 2 ACAACGA 65 0.0 41.53846 13 CGAGGGT 60 3.6379788E-12 41.250004 4 ATAGGGA 155 0.0 40.64516 4 GCGTTAG 50 1.0768417E-9 40.5 1 >>END_MODULE