SRR2935527.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935527.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	341751
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCTTCTGC	960	0.2809062738660604	No Hit
CCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCTTCTGC	741	0.21682453014036535	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	711	0.20804620908205096	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	704	0.20599793416844428	No Hit
CTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCTTCTGCT	545	0.15947283255937802	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	471	0.13781964061553587	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	396	0.1158738379697499	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCCGT	20	7.0263236E-4	45.0	39
GTTTGCG	20	7.0263236E-4	45.0	1
TCGTTCA	25	3.885034E-5	45.0	16
CGCGCAT	20	7.0263236E-4	45.0	36
ATGAGCG	20	7.0263236E-4	45.0	1
CGAATGG	50	2.1827873E-11	45.0	2
ACCGTTT	20	7.0263236E-4	45.0	15
TAGGCGG	25	3.885034E-5	45.0	2
TCATACG	20	7.0263236E-4	45.0	31
AGTAGCG	20	7.0263236E-4	45.0	1
CCCGATC	25	3.885034E-5	45.0	41
CCATTGA	20	7.0263236E-4	45.0	23
GTATACG	30	2.1610103E-6	44.999996	1
AACGGGA	55	6.002665E-11	40.909092	4
GCTACGA	105	0.0	40.714287	10
CTCGTGT	50	1.0768417E-9	40.5	16
ACGGGCT	50	1.0768417E-9	40.5	5
TATACGG	50	1.0768417E-9	40.5	2
ACAACGG	45	1.9215804E-8	40.0	2
TGCATAG	45	1.9215804E-8	40.0	1