SRR2935524.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935524.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	537744
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2372	0.44110208575084053	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGTCTTC	1784	0.33175637478056474	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGC	1252	0.23282454104555328	No Hit
GCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGTCTTCTGC	1244	0.23133684429765836	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCG	1143	0.21255467285548513	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	809	0.1504433336308727	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	700	0.13017346544080455	No Hit
CCTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGTCTTCTGC	696	0.1294296170668571	No Hit
CTGTCTCTTATACACATCTGACGCGCCTATAGTCGTATGCCGTCTTCTGCT	656	0.12199113332738254	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATAGCG	20	7.0299325E-4	45.000004	1
GTATGCG	25	3.8880265E-5	45.0	1
TTATGCG	30	2.1633386E-6	44.999996	1
CGCATAC	30	2.1633386E-6	44.999996	26
TACGAAT	70	0.0	41.785713	12
GCTACGA	70	0.0	41.785713	10
ACGGGTA	55	6.002665E-11	40.909092	5
TGCACGG	105	0.0	40.714287	2
TACACGG	45	1.9250365E-8	40.0	2
CGCGACC	115	0.0	39.130436	10
CTACGAA	75	0.0	39.0	11
TATTAGG	105	0.0	38.57143	2
CGGGTCC	35	6.2420895E-6	38.571426	6
GTCGATG	35	6.2420895E-6	38.571426	1
CCCGATC	35	6.2420895E-6	38.571426	41
TTACACG	270	0.0	38.333336	34
CGTTTTT	1250	0.0	37.98	1
TACCCTT	30	1.139114E-4	37.499996	30
AACCCGC	30	1.139114E-4	37.499996	21
TTAGTCG	30	1.139114E-4	37.499996	1