SRR2935522.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935522.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	509673
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5225	1.0251671169553813	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTT	1512	0.29666080016010266	No Hit
CGCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCTG	1309	0.2568313408793481	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTC	1208	0.23701471335542593	No Hit
GCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCTGC	1071	0.21013473344673939	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCT	987	0.19365357788228924	No Hit
CCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCTGC	945	0.18541300010006417	No Hit
CGTCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCT	804	0.15774820325973712	No Hit
CTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCTGCT	765	0.15009623817624243	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCC	582	0.11419086355369032	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCTACGA	30	2.163115E-6	45.000004	10
TTGCACG	35	1.2101555E-7	45.000004	1
TCTTGCG	20	7.029587E-4	45.0	1
GCGCTAG	20	7.029587E-4	45.0	1
CGTTTTT	3450	0.0	44.086956	1
CGACAGG	75	0.0	42.0	2
AGCGACT	120	0.0	41.250004	19
TAGGGCG	115	0.0	41.086956	5
TACGGGA	275	0.0	40.909092	4
GCGATCA	55	6.002665E-11	40.909092	9
CGTCAGG	55	6.002665E-11	40.909092	2
CTAACGG	50	1.0786607E-9	40.5	2
AAGGGCG	145	0.0	40.34483	5
CGTAAGG	125	0.0	39.600002	2
GGCGTTA	40	3.4531695E-7	39.375	9
TTCGTAG	40	3.4531695E-7	39.375	1
TAGTGCG	40	3.4531695E-7	39.375	1
TAACGGG	155	0.0	39.193546	3
CGTGGGT	35	6.2414456E-6	38.57143	4
CGAACGG	35	6.2414456E-6	38.57143	2