SRR2935517.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935517.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	478663
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7163	1.4964599310997508	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTC	4476	0.9351046560941623	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCG	2176	0.4545995825873318	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGC	2140	0.4470786336107031	No Hit
GCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTGC	1410	0.29457050158462217	No Hit
GAACTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCT	1292	0.26991850216122826	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTT	1092	0.22813545229106907	No Hit
CGCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTG	922	0.19261985990143377	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTT	841	0.17569772470401931	No Hit
CGTTCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTC	735	0.15355270827283496	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCT	643	0.13433250533256175	No Hit
CCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTGC	599	0.12514023436112673	No Hit
CTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTGCT	596	0.12451348861307433	Illumina Single End Adapter 1 (95% over 21bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	569	0.11887277688060285	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCT	532	0.1111429126546234	No Hit
CGTCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCT	524	0.10947159065981703	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTC	484	0.1011149806857852	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGTCGA	25	3.8873823E-5	45.000004	41
AATAGCG	25	3.8873823E-5	45.000004	1
CCGTGTT	20	7.0291565E-4	45.0	30
CAACCGT	20	7.0291565E-4	45.0	27
CCGTCGA	20	7.0291565E-4	45.0	41
CGTTTTT	4005	0.0	43.876408	1
GCTACGA	75	0.0	42.0	10
CAACGAG	225	0.0	41.0	14
TCGACGG	50	1.0786607E-9	40.500004	2
AGCGACT	235	0.0	40.212765	19
ACAACGA	230	0.0	40.108692	13
GTCGAAT	45	1.9243089E-8	40.0	43
GGACCGA	175	0.0	39.857143	8
GACCGAT	170	0.0	39.705883	9
CGTTTCT	165	0.0	39.545452	1
TTTCGCA	40	3.4525874E-7	39.375	13
CGAATAT	80	0.0	39.375	14
TTCGCAA	40	3.4525874E-7	39.375	14
TCGAATG	40	3.4525874E-7	39.375	44
AACGAGC	235	0.0	39.255318	15