SRR2935516.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935516.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	528420
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3706	0.7013360584383634	No Hit
CCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGC	1080	0.2043828772567276	No Hit
GCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGC	1063	0.2011657393739828	No Hit
CGCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTG	828	0.15669353923015783	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTC	736	0.13928314598236252	No Hit
CTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGCT	711	0.134552060860679	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGC	683	0.12925324552439346	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTT	677	0.12811778509518942	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTC	611	0.11562772037394496	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCG	600	0.11354604292040424	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	580	0.10976117482305742	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAGCGC	20	7.0298224E-4	45.000004	20
TCGGACG	20	7.0298224E-4	45.000004	1
TAACCTA	25	3.8879356E-5	45.0	18
ATCCCCG	25	3.8879356E-5	45.0	38
GCGATAC	25	3.8879356E-5	45.0	9
CGTTTTT	1645	0.0	43.35866	1
TCACGAC	50	1.0786607E-9	40.5	25
ACGGGTC	45	1.9248546E-8	40.0	5
GACGGTC	45	1.9248546E-8	40.0	29
AGTACGG	45	1.9248546E-8	40.0	2
ACGGGAC	125	0.0	39.600002	5
CGACGGT	40	3.453497E-7	39.375004	28
TTGTACG	40	3.453497E-7	39.375004	1
ATAGCGG	75	0.0	39.000004	2
AATGCGG	110	0.0	38.863632	2
TAACGGG	145	0.0	38.793102	3
AACACGT	105	0.0	38.57143	41
CCATACG	35	6.241884E-6	38.571426	2
TTAACGG	35	6.241884E-6	38.571426	2
ACGGGAT	270	0.0	38.333332	5