##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935516.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 528420 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.206682184625866 31.0 31.0 33.0 28.0 34.0 2 31.223956322622158 31.0 31.0 34.0 28.0 34.0 3 31.010007191249386 31.0 31.0 34.0 27.0 34.0 4 34.80644941523788 35.0 35.0 37.0 32.0 37.0 5 34.8485768895954 35.0 35.0 37.0 33.0 37.0 6 35.03997956171227 37.0 35.0 37.0 32.0 37.0 7 35.51141705461565 37.0 35.0 37.0 33.0 37.0 8 35.322919268763485 37.0 35.0 37.0 33.0 37.0 9 37.23514817758601 39.0 37.0 39.0 34.0 39.0 10 36.52037205253397 38.0 35.0 39.0 32.0 39.0 11 36.716609893645206 39.0 37.0 39.0 32.0 39.0 12 36.765765868059496 39.0 35.0 39.0 33.0 39.0 13 36.794426781726656 39.0 37.0 39.0 33.0 39.0 14 37.69984103553991 40.0 37.0 41.0 33.0 41.0 15 37.940197191627874 40.0 37.0 41.0 33.0 41.0 16 37.927058022027936 40.0 37.0 41.0 33.0 41.0 17 37.87397903183074 40.0 37.0 41.0 33.0 41.0 18 37.83121002233072 39.0 37.0 41.0 33.0 41.0 19 37.68060822830324 39.0 36.0 41.0 33.0 41.0 20 37.756587562923436 39.0 36.0 41.0 33.0 41.0 21 37.67911509783884 39.0 36.0 41.0 33.0 41.0 22 37.80380946973998 39.0 36.0 41.0 33.0 41.0 23 37.8699651792135 40.0 36.0 41.0 34.0 41.0 24 37.8599844820408 40.0 36.0 41.0 34.0 41.0 25 37.42377464895348 39.0 35.0 41.0 33.0 41.0 26 37.56289504560766 39.0 35.0 41.0 33.0 41.0 27 37.63199159759282 39.0 35.0 41.0 33.0 41.0 28 37.49737330154044 39.0 35.0 41.0 33.0 41.0 29 37.436064115665566 39.0 35.0 41.0 33.0 41.0 30 37.151021914386284 39.0 35.0 41.0 32.0 41.0 31 37.086139813027515 39.0 35.0 41.0 32.0 41.0 32 37.049663146739334 39.0 35.0 41.0 32.0 41.0 33 37.0058551909466 39.0 35.0 41.0 32.0 41.0 34 36.859518943264824 39.0 35.0 41.0 31.0 41.0 35 36.831192990424285 39.0 35.0 41.0 31.0 41.0 36 36.66474395367322 39.0 35.0 41.0 31.0 41.0 37 36.636452064645546 39.0 35.0 41.0 31.0 41.0 38 36.442874985806746 39.0 35.0 41.0 30.0 41.0 39 36.38900117330911 39.0 35.0 41.0 30.0 41.0 40 36.30058665455509 39.0 35.0 41.0 30.0 41.0 41 36.09838007645433 39.0 35.0 41.0 30.0 41.0 42 36.111390560538965 39.0 35.0 41.0 30.0 41.0 43 36.0815279512509 39.0 35.0 40.0 30.0 41.0 44 36.06199424700049 39.0 35.0 40.0 30.0 41.0 45 36.01871049543924 38.0 35.0 40.0 30.0 41.0 46 35.91846069414481 38.0 35.0 40.0 29.0 41.0 47 35.89348056470232 38.0 35.0 40.0 29.0 41.0 48 35.80856894137239 38.0 35.0 40.0 29.0 41.0 49 35.76463608493244 38.0 35.0 40.0 29.0 41.0 50 35.648135952462056 38.0 35.0 40.0 29.0 41.0 51 34.46888270693766 36.0 33.0 40.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 20.0 9 24.0 10 32.0 11 25.0 12 18.0 13 15.0 14 29.0 15 32.0 16 69.0 17 94.0 18 186.0 19 365.0 20 597.0 21 971.0 22 1438.0 23 2025.0 24 2929.0 25 4200.0 26 5423.0 27 6351.0 28 6696.0 29 7539.0 30 8897.0 31 11317.0 32 15164.0 33 22535.0 34 38879.0 35 39035.0 36 44424.0 37 67677.0 38 113782.0 39 127610.0 40 21.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.27867983800764 20.41538927368381 23.745126982324667 13.560803905983876 2 35.312062374626244 22.97074296960751 24.477877445971007 17.23931720979524 3 32.479845577381624 22.343968812686878 28.565724234510427 16.610461375421067 4 27.78982627455433 25.537072783013514 27.00068127625752 19.672419666174633 5 24.455357480791797 29.605427500851594 26.805003595624694 19.134211422731916 6 24.84690208546232 33.432118390674084 26.305968736989517 15.415010786874078 7 78.5960031792892 5.594792021498051 11.092123689489421 4.717081109723327 8 79.77177245372998 5.375458915256804 9.967450134362817 4.885318496650392 9 74.1203966541766 6.784754551303887 12.640134741304266 6.454714053215245 10 40.079860716854014 27.444646304076304 18.25176942583551 14.22372355323417 11 29.28995874493774 24.65841565421445 26.983649369819464 19.06797623102835 12 26.466825631126756 22.33810226713599 31.253926800651 19.94114530108626 13 25.696415729911813 22.759168842965824 32.71412891260739 18.830286514514967 14 20.558835774573257 26.576776049354677 32.448809658983386 20.41557851708868 15 19.352219825139095 24.597100791037434 35.53101699405776 20.519662389765717 16 24.24567578819878 24.981454146323003 30.909314560387568 19.863555505090645 17 24.414102418530714 23.798493622497254 29.309072328829338 22.47833163014269 18 25.24128534120586 23.666780212709586 30.589303962756897 20.502630483327657 19 24.271791378070475 25.705688656750315 28.556262064267063 21.466257900912154 20 24.54089549979183 27.216418757806288 28.26047462245941 19.98221111994247 21 24.44873396162144 25.794254570228226 30.635290110139664 19.121721358010674 22 22.90886037621589 23.621172552136557 30.429204042239128 23.040763029408424 23 21.942962037772983 25.05885469891374 30.35066802921918 22.647515234094094 24 22.555732182733433 25.287082245183758 29.94076681427652 22.21641875780629 25 22.95711744445706 26.183906740850084 27.934218992468114 22.924756822224744 26 22.031906438060634 25.494871503728096 28.26293478672268 24.21028727148859 27 22.090004163354905 24.61432194088036 30.112789069300934 23.1828848264638 28 20.64740168805117 26.19109799023504 29.78369478823663 23.377805533477158 29 23.054388554558873 25.613148631770184 29.15124332916998 22.181219484500968 30 25.98009159380796 23.804170924643277 29.135157639756255 21.080579841792513 31 25.658377805533476 25.03198213542258 28.257257484576666 21.05238257446728 32 26.256386964914274 26.353847318420954 26.51413648234359 20.875629234321185 33 25.960788766511488 25.165966466068657 27.08129896673101 21.791945800688847 34 24.300934862420046 25.09197229476553 29.347299496612543 21.259793346201885 35 23.866810491654366 27.599636652662657 27.435562620642674 21.09799023504031 36 26.306157980394385 28.147685553158475 25.94091820900042 19.60523825744673 37 23.89576473259907 28.24173952537754 27.151886756746528 20.710608985276863 38 23.178721471556717 28.90219900836456 26.676885810529505 21.242193709549223 39 24.827977744975588 25.81885621286098 26.461905302600204 22.891260739563226 40 26.437682146777185 24.523863593353774 28.125354831384126 20.91309942848492 41 22.911509783884032 25.816017561787973 27.365353317436885 23.907119336891107 42 22.797963740963628 26.80065099731274 28.3231141894705 22.078271072253134 43 23.04833276560312 25.652132773172852 28.76045569811892 22.539078763105106 44 23.298323303432873 25.08269936792703 28.23246659853904 23.386510730101058 45 23.359638166609894 24.1018508004996 27.89031452253889 24.648196510351614 46 24.28068581809924 25.07948223004428 27.478331630142687 23.16150032171379 47 21.932175163695543 26.094962340562432 29.755308277506533 22.217554218235495 48 22.21566178418682 26.193747397903184 28.48170016274933 23.108890655160668 49 23.665644752280382 24.352030581734226 29.626622762196735 22.355701903788653 50 22.419098444419213 24.78199159759282 29.326482722077134 23.47242723591083 51 22.564058892547596 24.05643238333144 27.61912872336399 25.76038000075697 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 368.0 1 591.0 2 814.0 3 3409.0 4 6004.0 5 3989.5 6 1975.0 7 2103.0 8 2231.0 9 2027.5 10 1824.0 11 1817.5 12 1811.0 13 1787.5 14 1764.0 15 1716.0 16 1668.0 17 1593.0 18 1518.0 19 1560.5 20 1603.0 21 1659.5 22 1716.0 23 1827.0 24 1938.0 25 2458.0 26 3528.0 27 4078.0 28 4806.0 29 5534.0 30 6524.0 31 7514.0 32 8900.0 33 10286.0 34 11602.0 35 12918.0 36 14436.5 37 15955.0 38 17141.5 39 18328.0 40 19347.5 41 20367.0 42 22782.0 43 25197.0 44 28432.0 45 31667.0 46 37289.0 47 42911.0 48 46647.5 49 50384.0 50 50074.0 51 49764.0 52 44850.0 53 39936.0 54 36407.5 55 32879.0 56 30630.0 57 28381.0 58 27112.0 59 25843.0 60 23257.0 61 20671.0 62 18571.5 63 16472.0 64 14678.5 65 12885.0 66 11119.5 67 9354.0 68 7943.0 69 6532.0 70 5538.0 71 4544.0 72 3970.5 73 3397.0 74 2748.5 75 1656.0 76 1212.0 77 917.5 78 623.0 79 444.0 80 265.0 81 196.0 82 127.0 83 93.0 84 59.0 85 36.0 86 13.0 87 8.5 88 4.0 89 3.5 90 3.0 91 2.5 92 2.0 93 1.5 94 1.0 95 1.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 528420.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.92721854398159 #Duplication Level Percentage of deduplicated Percentage of total 1 72.61033442787789 26.81297687969837 2 9.322294490740507 6.884928119818605 3 3.5851403054607247 3.971677787117553 4 2.1306268620255326 3.147124950787782 5 1.4896908674993328 2.750507011356069 6 1.187389311295005 2.6308190756987058 7 1.035115058144895 2.6756743979197917 8 0.9458953340231264 2.794342697536356 9 0.8139733476429416 2.705199452764848 >10 6.800366133681672 40.59058389009127 >50 0.04605538354999417 1.1484483430335262 >100 0.02742623964211263 1.7331824411495118 >500 0.004139809757300019 1.0368520314969405 >1k 0.0015524286589875072 1.117682921530705 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3706 0.7013360584383634 No Hit CCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGC 1080 0.2043828772567276 No Hit GCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGC 1063 0.2011657393739828 No Hit CGCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTG 828 0.15669353923015783 No Hit GAATCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTC 736 0.13928314598236252 No Hit CTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGCT 711 0.134552060860679 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGC 683 0.12925324552439346 No Hit CGTTTCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTT 677 0.12811778509518942 No Hit CGTTCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTC 611 0.11562772037394496 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCG 600 0.11354604292040424 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 580 0.10976117482305742 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.14268952726997464 0.0 2 0.0 0.0 0.0 0.6619734302259567 0.0 3 0.0 0.0 0.0 0.9920139283145982 0.0 4 0.0 0.0 0.0 1.3968055713258394 0.0 5 0.0 0.0 0.0 2.5277241588130654 0.0 6 0.0 0.0 0.0 3.415275727640892 0.0 7 0.0 0.0 0.0 4.221263388970894 0.0 8 0.0 0.0 0.0 5.389462927216987 0.0 9 0.0 0.0 0.0 5.931266795352182 0.0 10 0.0 0.0 0.0 6.982135422580523 0.0 11 0.0 0.0 0.0 8.237008440255858 0.0 12 0.0 0.0 0.0 9.331024563793951 0.0 13 0.0 0.0 0.0 9.805647023201242 0.0 14 0.0 0.0 0.0 10.047878581431437 0.0 15 0.0 0.0 0.0 10.363158093940426 0.0 16 1.8924340486734038E-4 0.0 0.0 10.94129669581015 0.0 17 1.8924340486734038E-4 0.0 0.0 11.612543052874607 0.0 18 1.8924340486734038E-4 0.0 0.0 12.389765716664774 0.0 19 1.8924340486734038E-4 0.0 0.0 12.859278604140645 0.0 20 3.7848680973468076E-4 0.0 0.0 13.332765603118732 0.0 21 3.7848680973468076E-4 0.0 0.0 13.889898187048182 0.0 22 3.7848680973468076E-4 0.0 0.0 14.485825668975437 0.0 23 5.677302146020212E-4 0.0 0.0 15.045039930358428 0.0 24 5.677302146020212E-4 0.0 0.0 15.477839597290034 0.0 25 5.677302146020212E-4 0.0 0.0 15.90363725824155 0.0 26 5.677302146020212E-4 0.0 0.0 16.300859165058096 0.0 27 5.677302146020212E-4 0.0 0.0 16.759963665266266 0.0 28 5.677302146020212E-4 0.0 0.0 17.171378827447864 0.0 29 5.677302146020212E-4 0.0 0.0 17.61061277014496 0.0 30 5.677302146020212E-4 0.0 0.0 18.199349002687256 0.0 31 5.677302146020212E-4 0.0 0.0 18.654100904583476 0.0 32 5.677302146020212E-4 0.0 0.0 19.115854812459787 0.0 33 5.677302146020212E-4 0.0 0.0 19.564929412209985 0.0 34 5.677302146020212E-4 0.0 0.0 20.044282956738957 0.0 35 5.677302146020212E-4 0.0 0.0 20.557321827334317 0.0 36 5.677302146020212E-4 0.0 0.0 20.99977290791416 0.0 37 5.677302146020212E-4 0.0 0.0 21.476098557965255 0.0 38 5.677302146020212E-4 0.0 0.0 21.994247000492035 0.0 39 5.677302146020212E-4 0.0 0.0 22.75216683698573 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTAGCGC 20 7.0298224E-4 45.000004 20 TCGGACG 20 7.0298224E-4 45.000004 1 TAACCTA 25 3.8879356E-5 45.0 18 ATCCCCG 25 3.8879356E-5 45.0 38 GCGATAC 25 3.8879356E-5 45.0 9 CGTTTTT 1645 0.0 43.35866 1 TCACGAC 50 1.0786607E-9 40.5 25 ACGGGTC 45 1.9248546E-8 40.0 5 GACGGTC 45 1.9248546E-8 40.0 29 AGTACGG 45 1.9248546E-8 40.0 2 ACGGGAC 125 0.0 39.600002 5 CGACGGT 40 3.453497E-7 39.375004 28 TTGTACG 40 3.453497E-7 39.375004 1 ATAGCGG 75 0.0 39.000004 2 AATGCGG 110 0.0 38.863632 2 TAACGGG 145 0.0 38.793102 3 AACACGT 105 0.0 38.57143 41 CCATACG 35 6.241884E-6 38.571426 2 TTAACGG 35 6.241884E-6 38.571426 2 ACGGGAT 270 0.0 38.333332 5 >>END_MODULE